<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Pascal,<div class=""><br class=""><div> I added the ability to save pseudobond files (.pb suffix) in ChimeraX, will be in tonight's builds,</div><div><br class=""></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>select /A,B min 15 max 24</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>save somelinks.pb selectedOnly true</div><div><br class=""></div><div>This saves crosslinks between chains A and B with lengths between 15 and 24. The link colors and radii are also saved.</div><div><br class=""></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div><br class=""></div><div><br class=""><blockquote type="cite" class=""><div class="">On Mar 6, 2019, at 2:33 AM, Pascal Albanese wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Dear ChimearX Users and developers, <div class=""><br class=""></div><div class="">I'm using ChimeraX for visualization and analysis of pseudobonds datasets from Crosslinking-MS and i found new features very useful (min max selection etc). </div><div class="">I think it would be useful (but i don't know how much effort will be required) to be able to select subsets of distances (e.g. form 15 to 24 Angstroms, or involving chain A and B) and being able to create and export these subsets. for instance i have a Complex of A, B and C and i want to select all pseudo-bonds involving A and B and export them as pb file (to be able to load them as a separate model lateron). Or to sel min 15 max 24, and then export them as pb file (with "save" function). </div><div class=""><br class=""></div><div class="">I think it would be really useful for both crosslinks visualization and analysis (i work with datasets of thousands of crosslinks on big complexes which make difficult to subselect them, i have to do it with pymol, then generate subsets and reformat them as .pb files). </div><div class=""><br class=""></div><div class="">i had a look to previous threads, but i didn't found similar topics. If i'm wrong my apologize.</div><div class=""><br class=""></div><div class="">Thank you!</div><div class=""><br class=""></div><div class="">Pascal</div><div class=""><div class=""><br class=""></div>-- <br class=""><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr" class=""><div style="margin: 0cm 0cm 0.0001pt;" class=""><font face="times new roman, serif" size="2" class="">Pascal Albanese, PhD</font></div><div style="margin: 0cm 0cm 0.0001pt;" class=""><font size="1" face="arial, helvetica, sans-serif" class=""><b class="">Post-doc</b>, Politecnico di Torino<br class=""></font></div><div style="margin: 0cm 0cm 0.0001pt;" class=""><font size="1" face="arial, helvetica, sans-serif" class="">Dipartimento DISAT,</font></div><p class=""><font size="1" face="arial, helvetica, sans-serif" class="">BioSolar Lab@Environment Park</font></p><p class=""><span style="font-family:arial,helvetica,sans-serif;font-size:x-small" class="">Via Livorno 60</span></p><p class=""><font size="1" face="arial, helvetica, sans-serif" class="">10144 Torino</font></p><div style="margin: 0cm 0cm 0.0001pt;" class=""><font size="1" face="arial, helvetica, sans-serif" class="">e-mail: <a href="mailto:pascal.albanese@polito.it" target="_blank" class="">pascal.albanese@polito.it</a> </font><br class=""></div><div style="margin: 0cm 0cm 0.0001pt;" class=""><font size="1" class=""><br class=""></font></div><font size="1" class="">Phone number: <a href="tel:+39%20011%20225%207655" value="+390112257655" style="color:rgb(17,85,204)" target="_blank" class="">+39 011 2257655</a></font><br class=""><div class=""><br class=""></div></div></div></div></div>
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