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--></style></head><body lang=EN-GB link="#0563C1" vlink="#954F72"><div class=WordSection1><p class=MsoNormal><span style='font-size:11.0pt'>Hi all,<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>I was wondering if there is a way how to generate images from linux terminal. I’ve come across a couple of very old posts in the mailing list stating that this was not possible at that time. So, I wonder if anything has changed.<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>If I use cif files only, chimerax gives “Unable to render images to save them” message. If I try to include volumetric data from cryo-EM overlaid on the structure I get an exception during opening a *.map file. Please see the script below. The exception is in the attachment<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>Best,<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>Lukas<o:p></o:p></span></p><div style='mso-element:para-border-div;border:none;border-bottom:solid windowtext 1.0pt;padding:0cm 0cm 1.0pt 0cm'><p class=MsoNormal style='border:none;padding:0cm'><span style='font-size:11.0pt'><o:p> </o:p></span></p></div><p class=MsoNormal><span style='font-size:11.0pt'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>open emd_8909.map<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>volume #1 color white transparency 0.7 level 0.1 step 1<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>zoom 1.2<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>open 6ds5.cif<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>set bgColor white<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>hide selAtoms<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>show selAtoms ribbons<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>color bychain ribbons<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>light full<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>light shadow true<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>save image default.png width 1600 height 1600 supersample 5 transparentBackground true<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>turn y 90<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>save image y.png width 1600 height 1600 supersample 5 transparentBackground true<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>turn z 90<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'>save image z.png width 1600 height 1600 supersample 5 transparentBackground true<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt'><o:p> </o:p></span></p></div></body></html>