<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class=""></div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Oct 16, 2018, at 11:31 AM, Dr. Eddie <<a href="mailto:eackad@gmail.com" class="">eackad@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Thanks for the help! As for the pdb, I've attached it. It shows fine in vmd and pymol.<div class="">Thanks,</div><div class="">Eddie</div></div><br class=""><div class="gmail_quote"><div dir="ltr" class="">On Tue, Oct 16, 2018 at 1:19 PM Eric Pettersen <<a href="mailto:pett@cgl.ucsf.edu" class="">pett@cgl.ucsf.edu</a>> wrote:<br class=""></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word;line-break:after-white-space" class=""><div class=""><blockquote type="cite" class=""><div class="">On Oct 15, 2018, at 8:35 PM, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" target="_blank" class="">meng@cgl.ucsf.edu</a>> wrote:</div><br class="m_4628591456527182851Apple-interchange-newline"><div class=""><span style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none;float:none;display:inline!important" class=""> I don’t know why your H’s are disconnected specifically, but it’s almost surely some issue with the input file.</span></div></blockquote><br class=""></div><div class="">If you provided the input file, we might be able to offer advice on how to get ChimeraX to handle it better. One thing you might try sight unseen is to remove the LINK/CONECT records in the file (assuming it’s a PDB file).</div><div class=""><br class=""></div><div class="">—Eric</div><br class=""><div class=""><div class=""><div style="word-wrap:break-word;line-break:after-white-space" class=""><div class=""><span class="m_4628591456527182851Apple-tab-span" style="white-space:pre-wrap"> </span>Eric Pettersen</div><div class=""><span class="m_4628591456527182851Apple-tab-span" style="white-space:pre-wrap"> </span>UCSF Computer Graphics Lab</div><div class=""><br class=""></div></div><br class="m_4628591456527182851Apple-interchange-newline"><br class="m_4628591456527182851Apple-interchange-newline"></div><br class=""><div class=""><blockquote type="cite" class=""></blockquote></div></div></div></blockquote></div><br clear="all" class=""><div class=""><br class=""></div>-- <br class=""><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature">Eddie<br class=""></div>
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