<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">I can reproduce the problem on an Ubuntu system where Hungarian is the primary language at installation. It may take me awhile to <i class="">compile</i> ChimeraX on such as system, so you may have to be patient…<div class=""><br class=""></div><div class="">—Eric<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Feb 12, 2018, at 12:59 PM, Fekete Attila <<a href="mailto:fekete.attila@science.unideb.hu" class="">fekete.attila@science.unideb.hu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Dear Eric,<br class=""><br class="">Many thanks for your response!<br class=""><br class="">Here are my answers:<br class="">1.) Yes, absolutely, billion times, I'm a Chimera fan, so Chimera 1.11.2 is able to open anything perfectly. <br class="">2.) I checked. I can open the downloaded mmCIF (yeeeah!), but not the pdb :( . <br class="">3.) see below, do you think my problem is in connection with the language of my system? I tried to change locales to en_US.utf8 but it's not working yet I have to go a bit deeper... <br class=""><br class="">Yours,<br class="">A.<br class=""><br class="">/home/feketea/>locale<br class="">LANG=hu_HU.UTF-8<br class="">LANGUAGE=hu:en<br class="">LC_CTYPE="hu_HU.UTF-8"<br class="">LC_NUMERIC=hu_HU.UTF-8<br class="">LC_TIME=hu_HU.UTF-8<br class="">LC_COLLATE="hu_HU.UTF-8"<br class="">LC_MONETARY=hu_HU.UTF-8<br class="">LC_MESSAGES="hu_HU.UTF-8"<br class="">LC_PAPER=hu_HU.UTF-8<br class="">LC_NAME=hu_HU.UTF-8<br class="">LC_ADDRESS=hu_HU.UTF-8<br class="">LC_TELEPHONE=hu_HU.UTF-8<br class="">LC_MEASUREMENT=hu_HU.UTF-8<br class="">LC_IDENTIFICATION=hu_HU.UTF-8<br class="">LC_ALL=<br class=""><br class=""><br class="">----- Eredeti üzenet -----<br class="">Feladó: "Eric Pettersen" <<a href="mailto:pett@cgl.ucsf.edu" class="">pett@cgl.ucsf.edu</a>><br class="">Címzett: "Fekete Attila" <<a href="mailto:fekete.attila@science.unideb.hu" class="">fekete.attila@science.unideb.hu</a>><br class="">Másolatot kap: "chimerax-users" <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>><br class="">Elküldött üzenetek: Hétfő, 2018. február 12. 19:32:56<br class="">Tárgy: Re: [chimerax-users] open local pdb files "containing no atoms and bonds"<br class=""><br class="">Hi Attila,<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>We have had this problem reported by another Ubuntu user and so far have been unable to reproduce it. I have a few questions:<br class=""><br class="">1) Do these files open in regular Chimera?<br class=""><br class="">2) Did you actually try opening downloaded mmCIF files, or only PDB files? If not, could you try with a downloaded mmCIF file (and what happens)?<br class=""><br class="">3) In a terminal window, what output do you get from the “locale” command?<br class=""><br class="">—Eric<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Eric Pettersen<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>UCSF Computer Graphics Lab<br class=""><br class=""><br class=""><blockquote type="cite" class="">On Feb 12, 2018, at 12:11 AM, Fekete Attila <<a href="mailto:fekete.attila@science.unideb.hu" class="">fekete.attila@science.unideb.hu</a>> wrote:<br class=""><br class="">Dear Colleagues,<br class=""><br class="">I have tried to open several local *.pdb files, but in each case I got the error: "Opened PDB data containing 0 atoms, 0 bonds and 0 coordinate sets", and a series of warnings (for each lines of the files) and ChimeraX doesn't show the structure.<br class="">I have also tried different versions of ChimeraX (0.1/0.5 and even alpha releases, recently I'm using 0.5 under Ubuntu 16.04).<br class="">I can open any online files (*pdb,*mmCIF) from the RCSB database, however if I download the same file, I got the above mentioned error message, so I have absolutely no clue to resolve the problem because I suppose this isn't related to pdb format issues but a bug can be somewhere in the softwere.<br class=""><br class="">I am really impressed by the visualization capabilities of ChimeraX so please help me if you can.<br class=""><br class="">Yours,<br class="">Attila<br class="">_______________________________________________<br class="">ChimeraX-users mailing list<br class=""><a href="mailto:ChimeraX-users@cgl.ucsf.edu" class="">ChimeraX-users@cgl.ucsf.edu</a><br class="">Manage subscription:<br class="">http://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users<br class=""></blockquote><br class=""></div></div></blockquote></div><br class=""></div></body></html>