<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Attila,<div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>We have had this problem reported by another Ubuntu user and so far have been unable to reproduce it. I have a few questions:</div><div class=""><br class=""></div><div class="">1) Do these files open in regular Chimera?</div><div class=""><br class=""></div><div class="">2) Did you actually try opening downloaded mmCIF files, or only PDB files? If not, could you try with a downloaded mmCIF file (and what happens)?</div><div class=""><br class=""></div><div class="">3) In a terminal window, what output do you get from the “locale” command?</div><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div><div class=""><br class=""></div></div>
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<div><br class=""><blockquote type="cite" class=""><div class="">On Feb 12, 2018, at 12:11 AM, Fekete Attila <<a href="mailto:fekete.attila@science.unideb.hu" class="">fekete.attila@science.unideb.hu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Dear Colleagues,<br class=""><br class="">I have tried to open several local *.pdb files, but in each case I got the error: "Opened PDB data containing 0 atoms, 0 bonds and 0 coordinate sets", and a series of warnings (for each lines of the files) and ChimeraX doesn't show the structure.<br class="">I have also tried different versions of ChimeraX (0.1/0.5 and even alpha releases, recently I'm using 0.5 under Ubuntu 16.04).<br class="">I can open any online files (*pdb,*mmCIF) from the RCSB database, however if I download the same file, I got the above mentioned error message, so I have absolutely no clue to resolve the problem because I suppose this isn't related to pdb format issues but a bug can be somewhere in the softwere.<br class=""><br class="">I am really impressed by the visualization capabilities of ChimeraX so please help me if you can.<br class=""><br class="">Yours,<br class="">Attila<br class="">_______________________________________________<br class="">ChimeraX-users mailing list<br class=""><a href="mailto:ChimeraX-users@cgl.ucsf.edu" class="">ChimeraX-users@cgl.ucsf.edu</a><br class="">Manage subscription:<br class="">http://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users<br class=""></div></div></blockquote></div><br class=""></div></body></html>