<div dir="ltr"><div><div>Hi, <br><br></div>sorry bothering again. But I think I try every way possible.I've installed both versions, <span class="m_5375515592069386787gmail-m_-4368635605611157519gmail-il">ChimeraX</span> 0.5 release (Dec 20, 2017) and also the current daily build. Same error. I tried to install as root, also gives me the same error. I've updated my NVIDIA driver and also some Linux packages. Still, the same error.<br><br></div><div>Don't know what to do. I'm working on Ubuntu 14.04 LTS (Graphics GeForce GTX970/PCIe/SSE2)<br></div><br></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><font color="#999999">Maurício Menegatti Rigo, <i>Ph.D.</i></font></div><div><span style="color:rgb(153,153,153);font-size:12.8px">Pós-doutorando</span></div><div><span style="color:rgb(153,153,153);font-size:12.8px">Programa de Pós-graduação em Pediatria e Saúde da Criança</span></div><div></div><div><span style="color:rgb(153,153,153);font-size:12.8px">Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)</span><span style="color:rgb(153,153,153);font-size:12.8px"><br></span></div><div><font color="#999999">Porto Alegre, RS, Brasil<br>Tel: +55 51 3320-3000 (Ramal 6037)</font></div><div><font color="#999999">Cel: +55 51 98180-4574</font></div><div><font color="#999999"><a href="http://lattes.cnpq.br/4948877541502725" target="_blank">http://lattes.cnpq.br/4948877541502725</a></font></div><div><font color="#999999"><br></font></div><div><font color="#999999"><i>"Fire and Blood"<br></i></font></div></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">2018-01-25 16:40 GMT-02:00 Eric Pettersen <span dir="ltr"><<a href="mailto:pett@cgl.ucsf.edu" target="_blank">pett@cgl.ucsf.edu</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word;line-break:after-white-space">I was able to open your file on an Ubuntu 16.04 system and ChimeraX 0.5 with the exact same behavior that Elaine got on her Mac.<div><br></div><div>—Eric</div><div><br><div>
<div style="color:rgb(0,0,0);letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word"><div><span class="m_-1989792545949820394Apple-tab-span" style="white-space:pre-wrap"> </span>Eric Pettersen</div><div><span class="m_-1989792545949820394Apple-tab-span" style="white-space:pre-wrap"> </span>UCSF Computer Graphics Lab</div></div>
</div>
<div><br><blockquote type="cite"><div><div class="h5"><div>On Jan 25, 2018, at 10:33 AM, Maurício Menegatti Rigo <<a href="mailto:mauriciomr1985@gmail.com" target="_blank">mauriciomr1985@gmail.com</a>> wrote:</div><br class="m_-1989792545949820394Apple-interchange-newline"></div></div><div><div><div class="h5"><div dir="auto">Hi Elaine,<div dir="auto"><br></div><div dir="auto">Thank you for your help. I'll verify my system then. </div><div dir="auto"><br></div><div dir="auto">Sincerely,</div><div dir="auto">Mauricio Menegatti Rigo</div></div><div class="gmail_extra"><br><div class="gmail_quote">Em 25/01/2018 16:20, "Elaine Meng" <<a href="mailto:meng@cgl.ucsf.edu" target="_blank">meng@cgl.ucsf.edu</a>> escreveu:<br type="attribution"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Maurício,<br>
I don’t have this problem opening your PDB file with ChimeraX 0.5 release (Dec 20, 2017) and also the current daily build. I only get one warning message that can be ignored, that it does not like the END on line 2615, and the structure looks fine. I’m testing on Mac.<br>
<br>
I’m not sure what’s happening for you. I guess you could make sure you are using a fairly recent version; otherwise, maybe it is something specific to your system or platform.<br>
Elaine<br>
<br>
> On Jan 25, 2018, at 10:05 AM, Maurício Menegatti Rigo <<a href="mailto:mauriciomr1985@gmail.com" target="_blank">mauriciomr1985@gmail.com</a>> wrote:<br>
><br>
> Sure, this is my file.<br>
><br>
><br>
> 2018-01-25 16:01 GMT-02:00 Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" target="_blank">meng@cgl.ucsf.edu</a>>:<br>
> Dear Mauricio,<br>
> It’s hard to tell without having the file, or at least part of it that gives these messages. Could send as attachment to the list, or if private, just to me.<br>
> Best,<br>
> Elaine<br>
> -----<br>
> Elaine C. Meng, Ph.D.<br>
> UCSF Chimera(X) team<br>
> Department of Pharmaceutical Chemistry<br>
> University of California, San Francisco<br>
><br>
> > On Jan 25, 2018, at 8:55 AM, Maurício Menegatti Rigo <<a href="mailto:mauriciomr1985@gmail.com" target="_blank">mauriciomr1985@gmail.com</a>> wrote:<br>
> ><br>
> > I don't understand, my .pdb file seems perfectly fine, but I keep getting this error:<br>
> ><br>
> > Ignored bad PDB record found on line 1<br>
> > ATOM 1 N ASN A 1 61.433 13.168 52.787 1.00 69.56 N<br>
> ><br>
> > Ignored bad PDB record found on line 2<br>
> > ATOM 2 CA ASN A 1 62.543 13.695 51.962 1.00 69.56 C<br>
> ><br>
> > Ignored bad PDB record found on line 3<br>
> > ATOM 3 C ASN A 1 61.990 14.337 50.735 1.00 69.56 C<br>
> ><br>
> > Ignored bad PDB record found on line 4<br>
> > ATOM 4 O ASN A 1 60.999 13.878 50.167 1.00 69.56 O<br>
> ><br>
> > Ignored bad PDB record found on line 5<br>
> > ATOM 5 CB ASN A 1 63.479 12.547 51.555 1.00 69.56 C<br>
> ><br>
> > 2610 messages similar to the above omitted<br>
> ><br>
> > I can open it in Chimera, PyMol, VMD, among others. But in ChimeraX is always the same error. I'm working on Linux (Ubuntu 14.04) with ChimeraX version 0.5 (2018-01-24).<br>
> ><br>
> > Any help?<br>
> ><br>
> > Thanks in advance,<br>
> > Mauricio M Rigo, Ph.D<br>
><br>
> <BEST_SiglecE_murine-BL0023000<wbr>1-chainA.pdb><br>
</blockquote></div></div></div></div>
______________________________<wbr>_________________<br>ChimeraX-users mailing list<br><a href="mailto:ChimeraX-users@cgl.ucsf.edu" target="_blank">ChimeraX-users@cgl.ucsf.edu</a><br>Manage subscription:<br><a href="http://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users" target="_blank">http://plato.cgl.ucsf.edu/<wbr>mailman/listinfo/chimerax-<wbr>users</a><br></div></blockquote></div><br></div></div></blockquote></div><br></div>