<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Elaine,<div class="">Considering your reply further:</div><div class="">Will ChimeraX include a agnostic plain XYZ import option?</div><div class="">We work with non-atomistic chromatin confirmations and so are interested in this option.</div><div class="">What would be your recommendation for a format for non-atomistic particle (xyz) coordinates?</div><div class="">Also, I have been looking into IMP’s RMF format and comparing it to UMM (<a href="http://www.scalalife.eu/content/umm.html" class="">http://www.scalalife.eu/content/umm.html</a>).</div><div class="">Will RMF still receive official Chimera backing in ChimeraX?</div><div class="">Many thanks,</div><div class="">Mike</div><div class=""><br class=""></div><div class=""><div><blockquote type="cite" class=""><div class="">On 26 May 2017, at 17:25, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" class="">meng@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hi Mike,<br class="">Not currently. You can use command “open formats” to list the current ChimeraX formats in the Log.<br class=""><br class="">The data formats are listed with a little more detail in the documentation for “open” (input) and “save” (output) commands. Input formats:<br class=""><<a href="http://rbvi.ucsf.edu/chimerax/docs/user/commands/open.html#local" class="">http://rbvi.ucsf.edu/chimerax/docs/user/commands/open.html#local</a>><br class=""><br class="">You may be able to use Chimera (not ChimeraX) to read XYZ and output PDB, if you don’t have any other converter handy.<br class="">I hope this helps,<br class="">Elaine<br class="">-----<br class="">Elaine C. Meng, Ph.D. <br class="">UCSF Chimera(X) team<br class="">Department of Pharmaceutical Chemistry<br class="">University of California, San Francisco<br class=""><br class=""><blockquote type="cite" class="">On May 25, 2017, at 4:10 PM, Mike Goodstadt <<a href="mailto:mikegoodstadt@gmail.com" class="">mikegoodstadt@gmail.com</a>> wrote:<br class=""><br class="">Hi!<br class="">Many thanks for the great work on this new version.<br class="">Does ChimeraX support XYZ files?<br class="">Chimera did but I get an “unrecognized filetype” error in ChimeraX.<br class="">Best regards,<br class="">Mike Goodstadt<br class=""></blockquote><br class=""></div></div></blockquote></div><br class=""><div class="">
<div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">Mike Goodstadt<br class=""><a href="mailto:mikegoodstadt@gmail.com" class="">mikegoodstadt@gmail.com</a><br class="">skype: mikegoodstadt<br class="">+34 653 756 614</div>
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