<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Jonas,<div class=""><br class=""></div><div class=""> I added an initial color zone command to ChimeraX, will be in tonight’s daily build. Here’s an example, image attached.</div><div class=""><br class=""></div><div class="">open 5199 from emdb</div><div class="">open 4v7q</div><div class="">color #1 zone #2 dist 10</div><div class=""><br class=""></div><div class="">And a few more commands to lower the contour level, increase to full resolution (step 1), and hide the connected bits of density less than 1 nm in size:</div><div class=""><br class=""></div><div class="">vol #1 level .1 step 1</div><div class="">surf dust #1 size 10</div><div class=""><div class="">color #1 zone #2 dist 10</div><div class=""><br class=""></div><div class="">This color zone doesn’t automatically recolor yet when the surface changes (e.g. new contour level). Needs some more work.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""></div><div class=""><img apple-inline="yes" id="7D0BE8F7-9BCE-40B0-A983-E8091D3D3738" src="cid:2CFD7DA6-2082-4D05-94C7-435042732143@cgl.ucsf.edu" class=""></div><div class=""><br class=""></div><div><blockquote type="cite" class=""><div class="">On Apr 3, 2017, at 6:53 PM, Tom Goddard wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hi Jonas,<br class=""><br class=""> The color zone capability is not yet in ChimeraX. I’ll see if I can add that later this week.<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom<br class=""><br class=""><blockquote type="cite" class="">On Apr 3, 2017, at 6:47 PM, Jonas Barandun wrote:<br class=""><br class="">Dear chimeraX users/developers<br class=""><br class="">Is there an easy way to color a cryoem density map based on individual subunits (from a pdb file) - similar to the color zone functionality in chimera?<br class=""><br class="">Thanks a lot<br class=""><br class="">Best<br class="">Jonas<br class=""><br class=""><br class="">_______________________________________________<br class="">Chimerax-users mailing list<br class=""><a href="mailto:Chimerax-users@cgl.ucsf.edu" class="">Chimerax-users@cgl.ucsf.edu</a><br class="">Manage subscription:<br class="">http://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users<br class=""><br class=""></blockquote><br class=""><br class="">_______________________________________________<br class="">Chimerax-users mailing list<br class=""><a href="mailto:Chimerax-users@cgl.ucsf.edu" class="">Chimerax-users@cgl.ucsf.edu</a><br class="">Manage subscription:<br class="">http://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users<br class=""><br class=""></div></div></blockquote></div><br class=""></div></body></html>