[chimerax-users] question about chimerax

[Fang, Fei]

Hi Elaine,


Thanks for your kindly reply, and I can move the object I want to move with your suggestion. BTW, when I want to save the image of the result by using save command line, "save [ image ]  proteasome [ format  tiff ] [models #1] [[ width  2457 ][ height  3000 ]| pixelSize 0.4] [ supersample 3 ] [ quality 95 ] [ transparentBackground  true ] ", there is a warning of "Expected a models specifier or a keyword". Any advice? Thanks a lot.


Best,

Fei

________________________________
From: Elaine Meng <meng at cgl.ucsf.edu>
Sent: Wednesday, August 8, 2018 7:12:15 PM
To: Fang, Fei
Cc: chimerax-users at cgl.ucsf.edu
Subject: Re: [chimerax-users] question about chimerax

Hi Fei,
Just selecting is not enough.  You also have to turn on one of the mouse modes to move only the selected protein, by clicking on the icon for that mousemode (see link I gave before) or using the “mousemode” command.

Or, without doing any selecting, you can just use the “move” command with the “model” option to specify which model to move, as suggested by Tom.
Elaine


> On Aug 8, 2018, at 1:19 PM, Fang, Fei <FEF13 at pitt.edu> wrote:
>
> Hi Elaine,
>
> Thanks for your kindly reply. I have two protein complexes, one is 12 from pdbdev, the other one is pdb code: 4cr4. When I opened the two complex one by one, the two proteins bind, and I can't move them by each other, even by selecting one of them. I'm not sure it's because the two protein complexes are too large or else. I'll appreciate it if you can help me solving the problem. Thanks.
>
> Best,
> Fei
> From: Elaine Meng <meng at cgl.ucsf.edu>
> Sent: Wednesday, August 8, 2018 4:03:13 PM
> To: Fang, Fei
> Cc: chimerax-users at cgl.ucsf.edu
> Subject: Re: [chimerax-users] question about chimerax
>
> Hi Fei,
> Re: moving models separately
>
> You can select part of the model (Ctrl-click) you want to move, and then use the mouse mode to “translate selected models” or “rotate selected models”… the unselected ones will not be affected by that mouse button.  If you use the icons on the left side of the window to assign the function to the mouse, that assigns only “button 3” (right button), but you can use the “mousemode” command to assign any button, optionally in combination with some other key like Shift.
>
> <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Frbvi.ucsf.edu%2Fchimerax%2Fdocs%2Fuser%2Ftools%2Fmousemodes.html&data=01%7C01%7CFEF13%40pitt.edu%7C09faa9032f234682baef08d5fd846272%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=e7HBpYKVjle1CM5AD9glFOZYEJrt5zr8JRNJ96OI8kg%3D&reserved=0>
> <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Frbvi.ucsf.edu%2Fchimerax%2Fdocs%2Fuser%2Fcommands%2Fui.html%23mousemode&data=01%7C01%7CFEF13%40pitt.edu%7C09faa9032f234682baef08d5fd846272%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=M5UaDmr%2F8d7xqpQwPIYxTrudSlhZW7vcnpbIT7BAh0U%3D&reserved=0>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Aug 8, 2018, at 8:54 AM, Fang, Fei <FEF13 at pitt.edu> wrote:
> >
> > Hi,
> > This is Fei from University of Pittsburgh. Here is a question about chimera x. By introducing two structures into the chimera x, how can I move the one structure over so that they're no longer covering each other? Thanks.
> > Best,
> > Fei
>
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