[chimerax-users] Mapping local correlation between two maps

[Elaine Meng]

Hello Reza,
Do you mean you are using ChimeraX?  In that case you’d use the “color" command instead of Chimera’s scolor, currently something like

color #1 map #3 palette 0.6,red:0.7,white:1,blue

<http://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#map>

Syntax may change slightly later, but that’s the way it is now.  Also bear in mind that model numbers start at 1 in ChimeraX (no #0).
I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Dec 6, 2017, at 3:42 PM, Reza Khayat <rkhayat at ccny.cuny.edu> wrote:
> 
> Hi,
> 
> Chimera allows one to map the CC between two maps onto a map and color the surface using the following commands:
> 
> vop localCorrelation #0 #1
> scolor #0 volume #2 cmap 0.6,red:0.7,white:1,blue
> 
> I'm having difficulty executing the second command -mapping the values onto the first volume and assigning colors. Any help would be appreciated. 
> 
> Best wishes,
> Reza
> 
> Reza Khayat, PhD
> Assistant Professor 
> City College of New York
> Department of Chemistry
> New York, NY 10031
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