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The first option worked,</div>
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thank you really much for your help.<br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>Da:</b> Elaine Meng <meng@cgl.ucsf.edu><br>
<b>Inviato:</b> giovedì 10 giugno 2021 17:09<br>
<b>A:</b> Francesca Magarotto - francesca.magarotto2@studio.unibo.it <francesca.magarotto2@studio.unibo.it><br>
<b>Cc:</b> Chimera-users@cgl.ucsf.edu <Chimera-users@cgl.ucsf.edu><br>
<b>Oggetto:</b> Re: [Chimera-users] Removing specific water molecules</font>
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<div class="PlainText">Hi Francesca,<br>
I can't say for certain without having your exact PDB file to test, but some things to try would be<br>
<br>
delete solvent & :546-893<br>
- or -<br>
delete :546-893.water<br>
<br>
How these water residues are written (and thus how to specify them) depends on the program that made the file.<br>
I hope this helps,<br>
Elaine<br>
-----<br>
Elaine C. Meng, Ph.D. <br>
UCSF Chimera(X) team<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
> On Jun 10, 2021, at 7:47 AM, Francesca Magarotto - francesca.magarotto2--- via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:<br>
> <br>
> Hi,<br>
> I have a problem using Chimera: I need to delete specific water molecules with a specific residue number, but this number is in common with residues that are useful (such as ligands or co-factors).
<br>
> For example, I type "del :546-893" in the command line in order to delete these water molecules, but I delete also the ligand and FAD and I don't want to.<br>
> I've read the guide about atom specification, but still I don't know how to do it.<br>
> Hope someone can help me,<br>
> thank you.<br>
> Francesca<br>
<br>
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