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<p>If you search for the sequences the PDB Data Bank (RCSB) provides
both the pdb file and the sequence in fasta format.</p>
<p>Best regards,</p>
<p>Marco<br>
</p>
<div class="moz-cite-prefix">Il 30/04/2021 17:59, Ralph Loring ha
scritto:<br>
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<div>Hi,</div>
<div>I'm very new to Chimera and have been working through the
tutorials, including the Comparative Modeling Tutorial.
However I'm stumped. I'm interested in modeling chimeric
proteins that involve the following pdbs: PDB 7KOO, 7KOX and
7KOQ and I can't get the sequence in my chimera to align with
the template structure in the pdbs. The problem is that the
template pdbs only came out in April and are not yet included
in UniProt. They are deposited in RSCB and EMDB, but these
don't appear to be alignment options in Chimera. Do I need to
appeal to UniProt, or is there an alternative way to make the
association between the sequence and the structure? Any
additional tutorials on using MAV would be helpful as there
seem to be a lot of editing features that are not explored in
your tutorial.</div>
<div>Thanks for your help,</div>
<br clear="all">
<div>
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<div>
<div>Ralph Loring<br>
Associate Professor of Pharmacology<br>
Department of Pharmaceutical Sciences<br>
</div>
<div>Northeastern University<br>
360 Huntington Avenue <br>
Boston, MA 02115 USA<br>
617-373-3216 office<br>
617-373-8886 fax<br>
<a href="mailto:r.loring@northeastern.edu"
target="_blank" moz-do-not-send="true">r.loring@northeastern.edu</a><br>
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<pre class="moz-signature" cols="72">--
Dr.Marco Sette, Ph.D.
Department of Chemical Sciences and Technology
University of Rome, "Tor Vergata"
via della Ricerca Scientifica, 00133, Rome, Italy
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