<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="ltr">
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Hi Jeff,</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
I wrote a short explanation on how to put together a conda environment with pychemera in this git repo: <a href="https://github.com/GrotjahnLab/guided_tomo_align" id="LPlnk584615">https://github.com/GrotjahnLab/guided_tomo_align</a></div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
You don't need all the files there, just pychimera.yml</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
I don't know enough about the <span style="background-color:rgb(255, 255, 255);display:inline !important">
cluster conformations function<span> </span></span>help you, sadly.</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Best,</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Benja</div>
<div id="appendonsend"></div>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Chimera-users <chimera-users-bounces@cgl.ucsf.edu> on behalf of Jeff Saxon <jmsstarlight@gmail.com><br>
<b>Sent:</b> Wednesday, December 9, 2020 7:01 AM<br>
<b>To:</b> chimera-users@cgl.ucsf.edu BB <chimera-users@cgl.ucsf.edu><br>
<b>Subject:</b> [Chimera-users] Using UCSF Chimera inside python environment</font>
<div> </div>
</div>
<div class="BodyFragment"><font size="2"><span style="font-size:11pt;">
<div class="PlainText">Dear Chimera Users,<br>
<br>
I would like to use chimera to do some calculations on PDB filles<br>
(mainly I am interesting to cluster conformations in multi-model PDB<br>
using Ensemble cluster)<br>
<br>
Could you explain to me how I could install chimera (I am using<br>
python3 with conda) in order that I could use some of Chimera's<br>
functions directly inside of my python scripts?<br>
<br>
<br>
I have already tried install package pychimers but did not succeed<br>
<br>
conda install -c insilichem pychimera<br>
<br>
nsatisfiableError: The following specifications were found<br>
<br>
to be incompatible with the existing python installation in your environment:<br>
<br>
Specifications:<br>
<br>
- pychimera -> python[version='2.7.*|>=2.7,<2.8.0a0']<br>
<br>
- pychimera -> python[version='3.4.*|3.5.*']<br>
<br>
Your python: python=3.8<br>
<br>
May I use chimera with my python using alternative ways of installations?<br>
<br>
Thank you in advance!<br>
J.<br>
_______________________________________________<br>
Chimera-users mailing list: Chimera-users@cgl.ucsf.edu<br>
Manage subscription: <a href="https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users">
https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br>
<br>
</div>
</span></font></div>
</body>
</html>