Model 0 (query.B99993790.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. Target seq: query.B99993790.pdb (#0) principal chain Template structures: query.B99993790.pdb (#0) Run locally, the Modeller binary location: C:\Program Files\Modeller9.24\lib\x86_64-w64\mod9.24.exe Now, modeller is running locally... Wrote C:\Users\cbeck\Desktop\8-3-20 protein\template_struc\query.B99993790.pdb_0_0.pdb MODELLER process output ----------------------- ----------------------- MODELLER process errors ----------------------- 'import site' failed; use -v for traceback Traceback (most recent call last): File "C:\Users\cbeck\Desktop\8-3-20 protein\LoopRefinement_3cpu.py", line 18, in ? from modeller.parallel import * File "C:\Program Files\Modeller9.24\modlib\modeller\parallel\__init__.py", line 1, in ? from modeller.parallel.job import job File "C:\Program Files\Modeller9.24\modlib\modeller\parallel\job.py", line 1, in ? import socket, random, os, select ImportError: No module named socket ----------------------- Traceback (most recent call last): File "C:\Program Files\Chimera 1.14\share\chimera\tasks.py", line 179, in runStatusCB task.statusCBList[0]() File "C:\Program Files\Chimera 1.14\share\chimera\SubprocessMonitor.py", line 165, in statusCB self.finished() File "C:\Program Files\Chimera 1.14\share\chimera\SubprocessMonitor.py", line 201, in finished self._after(self._aborted) File "C:\Program Files\Chimera 1.14\share\MultAlignViewer\ModellerBase.py", line 693, in _collectResultsCB raise NonChimeraError("Running Modeller failed; see reply log") NonChimeraError: Running Modeller failed; see reply log