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<div dir="ltr" data-setdir="false">Dear All,</div><div dir="ltr" data-setdir="false"><br></div><div dir="ltr" data-setdir="false">With the request from Greg, the result is as following.<br></div><div dir="ltr" data-setdir="false"><div>$ ldd _tkinter.so<br> linux-vdso.so.1 (0x00007ffcd61fa000)<br> libtk8.6.so => not found<br> libtcl8.6.so => /lib64/libtcl8.6.so (0x00007fe164edd000)<br> libX11.so.6 => /lib64/libX11.so.6 (0x00007fe164b99000)<br> libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fe164979000)<br> libc.so.6 => /lib64/libc.so.6 (0x00007fe1645b7000)<br> libdl.so.2 => /lib64/libdl.so.2 (0x00007fe1643b3000)<br> libz.so.1 => /lib64/libz.so.1 (0x00007fe16419c000)<br> libm.so.6 => /lib64/libm.so.6 (0x00007fe163e1a000)<br> libxcb.so.1 => /lib64/libxcb.so.1 (0x00007fe163bf1000)<br> /lib64/ld-linux-x86-64.so.2 (0x00007fe1654af000)<br><div> libXau.so.6 => /lib64/libXau.so.6 (0x00007fe1639ed000)</div><div><br></div><div dir="ltr" data-setdir="false">The version of Chimera involved is: <span><a href="http://www.cgl.ucsf.edu/chimera/cgi-bin/secure/chimera-get.py?file=linux_x86_64/chimera-1.14-linux_x86_64.bin" rel="nofollow" target="_blank" class="">chimera-1.14-linux_x86_64.bin</a></span><div><br></div></div><div dir="ltr" data-setdir="false"><div dir="ltr" data-setdir="false">I am looking forward to getting your advice on how to solve the issue, and if <span>libtk8.6.so is what was missing, how to install it especially in the directory <span>
/UCSF-chimera64-1.14/lib/python2.7/lib-dynload/.</span></span><br></div><div dir="ltr" data-setdir="false"><br></div><div dir="ltr" data-setdir="false">Smith<br></div><br></div></div><div><br></div></div>
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On Tuesday, August 25, 2020, 8:48:29 AM GMT+8, Greg Couch <gregc@cgl.ucsf.edu> wrote:
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<p>The CHIMERA/bin directory should not be on your path, nor should
you run chimera when in the CHIMERA/bin directory. As part of the
installation process it asks you where you want to put a symbolic
link to the chimera binary on your PATH, e.g., if /usr/local/bin
is on your PATH, then one of the choices will be
/usr/local/bin/chimera. If you didn't do that, then you need to
use the full path to the chimera binary. So go back to your home
directory or a directory with the data you are working on, and run
chimera from there. You can make a symbolic link to the chimera
binary anytime to make running it easier.</p>
<p>If that still doesn't work, then I would suspect that there is
shared library that is missing. Run:</p>
<p> ldd
/UCSF-chimera64-1.14/lib/python2.7/lib-dynload/_tkinter.so</p>
<p>And look for missing libraries. Then use your Linux
distribution's package manager to install it. And please let
everyone know which libraries are missing. And also please share
which version of Linux you are using. With that information, we
should be able to figure out which system packages are missing.<br clear="none">
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<p> HTH,</p>
<p> Greg<br clear="none">
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<div class="yiv3936771076yqt5702304131" id="yiv3936771076yqt52485"><div class="yiv3936771076moz-cite-prefix">On 8/24/2020 5:07 AM, Smith Lee wrote:<br clear="none">
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<div><span style="font-size:12.0pt;" lang="EN-US">Dear All,</span>
<p class="yiv3936771076ydp8588767MsoNormal"><span style="font-size:12.0pt;" lang="EN-US"></span><span style="font-size:12.0pt;" lang="EN-US">From
<a rel="nofollow" shape="rect" class="yiv3936771076moz-txt-link-freetext" target="_blank" href="https://www.cgl.ucsf.edu/chimera/download.html">https://www.cgl.ucsf.edu/chimera/download.html</a> I have
downloaded the
chimera-1.14-linux_x86_64.bin, and have tried to install
it exactly based on
the accompanied exact "Instructions”. After the
installation completed, I
got to the bin folder, and try to launch chimera with
./chimera. However her</span><span style="font-size:12.0pt;">俄<span lang="EN-US"> it says the installed
/UCSF-chimera64-1.14/lib/python2.7/lib-tk/Tkinter.py
was not configured for my
python.</span></span>
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<p class="yiv3936771076ydp8588767MsoNormal"><span style="font-size:12.0pt;" lang="EN-US"></span><span style="font-size:12.0pt;" lang="EN-US">Will you please let me know how
to configure TK for my python, which was a downloaded
component of the chimera
package?</span>
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<p class="yiv3936771076ydp8588767MsoNormal"><span style="font-size:12.0pt;" lang="EN-US"></span><span style="font-size:12.0pt;" lang="EN-US">Best wishes,</span>
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<p class="yiv3936771076ydp8588767MsoNormal"><span style="font-size:12.0pt;" lang="EN-US"></span><span style="font-size:12.0pt;" lang="EN-US">Smith</span>
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