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<p>So the administrator of your CentOS 8 computer needs to install
the libXScrnSaver package, by running the command:<br>
</p>
<p> sudo dnf install -y libXscrnSaver</p>
<p>Please let me know if that fixes your problem.</p>
<p> -- Greg<br>
</p>
<div class="moz-cite-prefix">On 8/25/2020 6:15 PM, Smith Lee wrote:<br>
</div>
<blockquote type="cite"
cite="mid:1344415298.5630760.1598404555263@mail.yahoo.com">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<div class="ydp6fe39d77yahoo-style-wrap"
style="font-family:Helvetica Neue, Helvetica, Arial,
sans-serif;font-size:13px;">
<div dir="ltr" data-setdir="false">Dear Greg,</div>
<div dir="ltr" data-setdir="false"><br>
</div>
<div dir="ltr" data-setdir="false">My linus is Centos 8.</div>
<div dir="ltr" data-setdir="false"><br>
</div>
<div dir="ltr" data-setdir="false">Smith<br>
</div>
<div><br>
</div>
</div>
<div id="yahoo_quoted_8490256157" class="yahoo_quoted">
<div style="font-family:'Helvetica Neue', Helvetica, Arial,
sans-serif;font-size:13px;color:#26282a;">
<div> On Wednesday, August 26, 2020, 1:14:41 AM GMT+8, Greg
Couch <a class="moz-txt-link-rfc2396E" href="mailto:gregc@cgl.ucsf.edu"><gregc@cgl.ucsf.edu></a> wrote: </div>
<div><br>
</div>
<div><br>
</div>
<div>
<div id="yiv8755724893">
<div>
<p>I would still like to know which version of Linux you
have. Red Hat Enterprise Linux 7? Ubuntu 18.10?
OpenSUSE Leap 15.2? etc.</p>
<p>The "ImportError: libXss.so.1: cannot open sharted
object file: No such file or directory." means that
your system is missing the X screensaver package. On
CentOS/RHEL, that is the libXScrnSaver package. On
Debian-based systems, that is the libxss1 pacakge. <br
clear="none">
</p>
<p> -- Greg<br clear="none">
</p>
<div class="yiv8755724893yqt2399395937"
id="yiv8755724893yqt92098">
<div class="yiv8755724893moz-cite-prefix">On 8/25/2020
1:10 AM, Smith Lee wrote:<br clear="none">
</div>
<blockquote type="cite"> </blockquote>
</div>
</div>
<div class="yiv8755724893yqt2399395937"
id="yiv8755724893yqt62491">
<div>
<div class="yiv8755724893ydp78d438beyahoo-style-wrap"
style="font-family:Helvetica Neue, Helvetica, Arial,
sans-serif;font-size:13px;">
<div dir="ltr">
<div>Dear Greg,<br clear="none">
<br clear="none">
Version: chimera-1.14-linux_x86_64.bin （Is it
waht you mean for Version?）。<br clear="none">
<br clear="none">
In the drectory "UCSF-Chimera64-1.14", I run:<br
clear="none">
ldd ./lib/python2.7/lib-dynload/_tkinter.so<br
clear="none">
<br clear="none">
It gave:<br clear="none">
linux-vdso.so.1 (0x00007ffcd61fa000)<br
clear="none">
libtk8.6.so => not found<br clear="none">
libtcl8.6.so => /lib64/libtcl8.6.so
(0x00007fe164edd000)<br clear="none">
libX11.so.6 => /lib64/libX11.so.6
(0x00007fe164b99000)<br clear="none">
libpthread.so.0 => /lib64/libpthread.so.0
(0x00007fe164979000)<br clear="none">
libc.so.6 => /lib64/libc.so.6
(0x00007fe1645b7000)<br clear="none">
libdl.so.2 => /lib64/libdl.so.2
(0x00007fe1643b3000)<br clear="none">
libz.so.1 => /lib64/libz.so.1
(0x00007fe16419c000)<br clear="none">
libm.so.6 => /lib64/libm.so.6
(0x00007fe163e1a000)<br clear="none">
libxcb.so.1 => /lib64/libxcb.so.1
(0x00007fe163bf1000)<br clear="none">
/lib64/ld-linux-x86-64.so.2
(0x00007fe1654af000)<br clear="none">
libXau.so.6 => /lib64/libXau.so.6
(0x00007fe1639ed000)<br clear="none">
<br clear="none">
But "libtk8.6.so" was really in
"UCSF-Chimera64-1.14/lib".<br clear="none">
<br clear="none">
When I run "./chimera" in
"UCSF-Chimera64-1.14/bin", the last 3 sentences
of the error message was as following:<br
clear="none">
“~/.local/UCSF-Chimera64-1.14/lib/python2.7/lib-tk/Tkinter.py",line 39,
in <module><br clear="none">
import_tkinter # If this fails you Python may
not be configured for Tk<br clear="none">
ImportError: libXss.so.1: cannot open sharted
object file: No such file or directory.<br
clear="none">
<br clear="none">
I am looking forward to getting your advice on
how to have the issue solved.<br clear="none">
<br clear="none">
Smith<br clear="none">
<br clear="none">
</div>
<div><br clear="none">
</div>
</div>
<div><br clear="none">
</div>
</div>
<div class="yiv8755724893yahoo_quoted"
id="yiv8755724893yahoo_quoted_8428790141">
<div style="font-family:'Helvetica Neue', Helvetica,
Arial, sans-serif;font-size:13px;color:#26282a;">
<div> On Tuesday, August 25, 2020, 11:48:06 AM
GMT+8, Greg Couch <a rel="nofollow"
shape="rect"
class="yiv8755724893moz-txt-link-rfc2396E"
ymailto="mailto:gregc@cgl.ucsf.edu"
target="_blank"
href="mailto:gregc@cgl.ucsf.edu"
moz-do-not-send="true"><gregc@cgl.ucsf.edu></a>
wrote: </div>
<div><br clear="none">
</div>
<div><br clear="none">
</div>
<div>
<div id="yiv8755724893">
<div>
<p>You still haven't said which version of
Linux you have. That might be critical.<br
clear="none">
</p>
<p>I left out a step for the ldd, do:</p>
<p> env
LD_LIBRARY_PATH=/UCSF-chimera64-1.14/lib
ldd
/UCSF-chimera64-1.14/lib/python2.7/lib-dynload/_tkinter.so</p>
<p>It should find the libtk8.6.so in
/UCSF-chimera64-1.14/lib/.</p>
<p> -- Greg<br clear="none">
</p>
<div class="yiv8755724893yqt3548506643"
id="yiv8755724893yqt05626">
<div class="yiv8755724893moz-cite-prefix">On
8/24/2020 8:32 PM, Smith Lee wrote:<br
clear="none">
</div>
<blockquote type="cite"> </blockquote>
</div>
</div>
<div class="yiv8755724893yqt3548506643"
id="yiv8755724893yqt79183">
<div>
<div
class="yiv8755724893ydp795bc74cyahoo-style-wrap"
style="font-family:Helvetica Neue,
Helvetica, Arial,
sans-serif;font-size:13px;">
<div dir="ltr">Dear All,</div>
<div dir="ltr"><br clear="none">
</div>
<div dir="ltr">With the request from
Greg, the result is as following.<br
clear="none">
</div>
<div dir="ltr">
<div>$ ldd _tkinter.so<br clear="none">
linux-vdso.so.1
(0x00007ffcd61fa000)<br clear="none">
libtk8.6.so => not found<br
clear="none">
libtcl8.6.so =>
/lib64/libtcl8.6.so
(0x00007fe164edd000)<br clear="none">
libX11.so.6 =>
/lib64/libX11.so.6
(0x00007fe164b99000)<br clear="none">
libpthread.so.0 =>
/lib64/libpthread.so.0
(0x00007fe164979000)<br clear="none">
libc.so.6 => /lib64/libc.so.6
(0x00007fe1645b7000)<br clear="none">
libdl.so.2 =>
/lib64/libdl.so.2
(0x00007fe1643b3000)<br clear="none">
libz.so.1 => /lib64/libz.so.1
(0x00007fe16419c000)<br clear="none">
libm.so.6 => /lib64/libm.so.6
(0x00007fe163e1a000)<br clear="none">
libxcb.so.1 =>
/lib64/libxcb.so.1
(0x00007fe163bf1000)<br clear="none">
/lib64/ld-linux-x86-64.so.2
(0x00007fe1654af000)<br clear="none">
<div> libXau.so.6 =>
/lib64/libXau.so.6
(0x00007fe1639ed000)</div>
<div><br clear="none">
</div>
<div dir="ltr">The version of
Chimera involved is: <span><a
rel="nofollow" shape="rect"
class="yiv8755724893"
target="_blank"
href="http://www.cgl.ucsf.edu/chimera/cgi-bin/secure/chimera-get.py?file=linux_x86_64/chimera-1.14-linux_x86_64.bin"
moz-do-not-send="true">chimera-1.14-linux_x86_64.bin</a></span>
<div><br clear="none">
</div>
</div>
<div dir="ltr">
<div dir="ltr">I am looking
forward to getting your advice
on how to solve the issue, and
if <span>libtk8.6.so is what
was missing, how to install it
especially in the directory <span>
/UCSF-chimera64-1.14/lib/python2.7/lib-dynload/.</span></span><br
clear="none">
</div>
<div dir="ltr"><br clear="none">
</div>
<div dir="ltr">Smith<br
clear="none">
</div>
<br clear="none">
</div>
</div>
<div><br clear="none">
</div>
</div>
</div>
<div class="yiv8755724893yahoo_quoted"
id="yiv8755724893yahoo_quoted_8731858175">
<div style="font-family:'Helvetica
Neue', Helvetica, Arial,
sans-serif;font-size:13px;color:#26282a;">
<div> On Tuesday, August 25, 2020,
8:48:29 AM GMT+8, Greg Couch <a
rel="nofollow" shape="rect"
class="yiv8755724893moz-txt-link-rfc2396E"
ymailto="mailto:gregc@cgl.ucsf.edu" target="_blank"
href="mailto:gregc@cgl.ucsf.edu"
moz-do-not-send="true"><gregc@cgl.ucsf.edu></a>
wrote: </div>
<div><br clear="none">
</div>
<div><br clear="none">
</div>
<div>
<div id="yiv8755724893">
<div>
<p>The CHIMERA/bin directory
should not be on your path,
nor should you run chimera
when in the CHIMERA/bin
directory. As part of the
installation process it asks
you where you want to put a
symbolic link to the chimera
binary on your PATH, e.g., if
/usr/local/bin is on your
PATH, then one of the choices
will be
/usr/local/bin/chimera. If
you didn't do that, then you
need to use the full path to
the chimera binary. So go
back to your home directory or
a directory with the data you
are working on, and run
chimera from there. You can
make a symbolic link to the
chimera binary anytime to make
running it easier.</p>
<p>If that still doesn't work,
then I would suspect that
there is shared library that
is missing. Run:</p>
<p> ldd
/UCSF-chimera64-1.14/lib/python2.7/lib-dynload/_tkinter.so</p>
<p>And look for missing
libraries. Then use your
Linux distribution's package
manager to install it. And
please let everyone know which
libraries are missing. And
also please share which
version of Linux you are
using. With that information,
we should be able to figure
out which system packages are
missing.<br clear="none">
</p>
<p> HTH,</p>
<p> Greg<br clear="none">
</p>
<div
class="yiv8755724893yqt5702304131"
id="yiv8755724893yqt52485">
<div
class="yiv8755724893moz-cite-prefix">On
8/24/2020 5:07 AM, Smith Lee
wrote:<br clear="none">
</div>
<blockquote type="cite"> </blockquote>
</div>
</div>
<div
class="yiv8755724893yqt5702304131"
id="yiv8755724893yqt04102">
<div>
<div
class="yiv8755724893yahoo-style-wrap"
style="font-family:Helvetica
Neue, Helvetica, Arial,
sans-serif;font-size:13px;">
<div dir="ltr">
<div><span
style="font-size:12.0pt;"
lang="EN-US">Dear All,</span>
<p
class="yiv8755724893ydp8588767MsoNormal"><span
style="font-size:12.0pt;" lang="EN-US"></span><span
style="font-size:12.0pt;"
lang="EN-US">From <a
rel="nofollow"
shape="rect"
class="yiv8755724893moz-txt-link-freetext"
target="_blank"
href="https://www.cgl.ucsf.edu/chimera/download.html"
moz-do-not-send="true">https://www.cgl.ucsf.edu/chimera/download.html</a>
I have downloaded
the
chimera-1.14-linux_x86_64.bin,
and have tried to
install it exactly
based on the
accompanied exact
"Instructions”.
After the
installation
completed, I got to
the bin folder, and
try to launch
chimera with
./chimera. However
her</span><span
style="font-size:12.0pt;">俄<span
lang="EN-US"> it
says the installed
/UCSF-chimera64-1.14/lib/python2.7/lib-tk/Tkinter.py was not configured
for my python.</span></span>
</p>
<p
class="yiv8755724893ydp8588767MsoNormal"><span
style="font-size:12.0pt;" lang="EN-US"></span><span
style="font-size:12.0pt;"
lang="EN-US">Will
you please let me
know how to
configure TK for my
python, which was a
downloaded component
of the chimera
package?</span> </p>
<p
class="yiv8755724893ydp8588767MsoNormal"><span
style="font-size:12.0pt;" lang="EN-US"></span><span
style="font-size:12.0pt;"
lang="EN-US">Best
wishes,</span> </p>
<p
class="yiv8755724893ydp8588767MsoNormal"><span
style="font-size:12.0pt;" lang="EN-US"></span><span
style="font-size:12.0pt;"
lang="EN-US">Smith</span>
</p>
</div>
<div><br clear="none">
</div>
</div>
</div>
<br clear="none">
<fieldset
class="yiv8755724893mimeAttachmentHeader"></fieldset>
<pre class="yiv8755724893moz-quote-pre">_______________________________________________
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Manage subscription: <a rel="nofollow" shape="rect" class="yiv8755724893moz-txt-link-freetext" target="_blank" href="https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" moz-do-not-send="true">https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a>
</pre>
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