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<p>I would still like to know which version of Linux you have. Red
Hat Enterprise Linux 7? Ubuntu 18.10? OpenSUSE Leap 15.2? etc.</p>
<p>The "ImportError: libXss.so.1: cannot open sharted object file:
No such file or directory." means that your system is missing the
X screensaver package. On CentOS/RHEL, that is the libXScrnSaver
package. On Debian-based systems, that is the libxss1 pacakge. <br>
</p>
<p> -- Greg<br>
</p>
<div class="moz-cite-prefix">On 8/25/2020 1:10 AM, Smith Lee wrote:<br>
</div>
<blockquote type="cite"
cite="mid:508828936.5269496.1598343009234@mail.yahoo.com">
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<div>Dear Greg,<br>
<br>
Version: chimera-1.14-linux_x86_64.bin （Is it waht you mean
for Version?）。<br>
<br>
In the drectory "UCSF-Chimera64-1.14", I run:<br>
ldd ./lib/python2.7/lib-dynload/_tkinter.so<br>
<br>
It gave:<br>
linux-vdso.so.1 (0x00007ffcd61fa000)<br>
libtk8.6.so => not found<br>
libtcl8.6.so => /lib64/libtcl8.6.so
(0x00007fe164edd000)<br>
libX11.so.6 => /lib64/libX11.so.6
(0x00007fe164b99000)<br>
libpthread.so.0 => /lib64/libpthread.so.0
(0x00007fe164979000)<br>
libc.so.6 => /lib64/libc.so.6 (0x00007fe1645b7000)<br>
libdl.so.2 => /lib64/libdl.so.2 (0x00007fe1643b3000)<br>
libz.so.1 => /lib64/libz.so.1 (0x00007fe16419c000)<br>
libm.so.6 => /lib64/libm.so.6 (0x00007fe163e1a000)<br>
libxcb.so.1 => /lib64/libxcb.so.1
(0x00007fe163bf1000)<br>
/lib64/ld-linux-x86-64.so.2 (0x00007fe1654af000)<br>
libXau.so.6 => /lib64/libXau.so.6
(0x00007fe1639ed000)<br>
<br>
But "libtk8.6.so" was really in "UCSF-Chimera64-1.14/lib".<br>
<br>
When I run "./chimera" in "UCSF-Chimera64-1.14/bin", the
last 3 sentences of the error message was as following:<br>
“~/.local/UCSF-Chimera64-1.14/lib/python2.7/lib-tk/Tkinter.py",line 39,
in <module><br>
import_tkinter # If this fails you Python may not be
configured for Tk<br>
ImportError: libXss.so.1: cannot open sharted object file:
No such file or directory.<br>
<br>
I am looking forward to getting your advice on how to have
the issue solved.<br>
<br>
Smith<br>
<br>
</div>
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</div>
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<div><br>
</div>
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<div id="yahoo_quoted_8428790141" class="yahoo_quoted">
<div style="font-family:'Helvetica Neue', Helvetica, Arial,
sans-serif;font-size:13px;color:#26282a;">
<div> On Tuesday, August 25, 2020, 11:48:06 AM GMT+8, Greg
Couch <a class="moz-txt-link-rfc2396E" href="mailto:gregc@cgl.ucsf.edu"><gregc@cgl.ucsf.edu></a> wrote: </div>
<div><br>
</div>
<div><br>
</div>
<div>
<div id="yiv8195550976">
<div>
<p>You still haven't said which version of Linux you
have. That might be critical.<br clear="none">
</p>
<p>I left out a step for the ldd, do:</p>
<p> env LD_LIBRARY_PATH=/UCSF-chimera64-1.14/lib ldd
/UCSF-chimera64-1.14/lib/python2.7/lib-dynload/_tkinter.so</p>
<p>It should find the libtk8.6.so in
/UCSF-chimera64-1.14/lib/.</p>
<p> -- Greg<br clear="none">
</p>
<div class="yiv8195550976yqt3548506643"
id="yiv8195550976yqt05626">
<div class="yiv8195550976moz-cite-prefix">On 8/24/2020
8:32 PM, Smith Lee wrote:<br clear="none">
</div>
<blockquote type="cite"> </blockquote>
</div>
</div>
<div class="yiv8195550976yqt3548506643"
id="yiv8195550976yqt79183">
<div>
<div class="yiv8195550976ydp795bc74cyahoo-style-wrap"
style="font-family:Helvetica Neue, Helvetica, Arial,
sans-serif;font-size:13px;">
<div dir="ltr">Dear All,</div>
<div dir="ltr"><br clear="none">
</div>
<div dir="ltr">With the request from Greg, the
result is as following.<br clear="none">
</div>
<div dir="ltr">
<div>$ ldd _tkinter.so<br clear="none">
linux-vdso.so.1 (0x00007ffcd61fa000)<br
clear="none">
libtk8.6.so => not found<br clear="none">
libtcl8.6.so => /lib64/libtcl8.6.so
(0x00007fe164edd000)<br clear="none">
libX11.so.6 => /lib64/libX11.so.6
(0x00007fe164b99000)<br clear="none">
libpthread.so.0 => /lib64/libpthread.so.0
(0x00007fe164979000)<br clear="none">
libc.so.6 => /lib64/libc.so.6
(0x00007fe1645b7000)<br clear="none">
libdl.so.2 => /lib64/libdl.so.2
(0x00007fe1643b3000)<br clear="none">
libz.so.1 => /lib64/libz.so.1
(0x00007fe16419c000)<br clear="none">
libm.so.6 => /lib64/libm.so.6
(0x00007fe163e1a000)<br clear="none">
libxcb.so.1 => /lib64/libxcb.so.1
(0x00007fe163bf1000)<br clear="none">
/lib64/ld-linux-x86-64.so.2
(0x00007fe1654af000)<br clear="none">
<div> libXau.so.6 => /lib64/libXau.so.6
(0x00007fe1639ed000)</div>
<div><br clear="none">
</div>
<div dir="ltr">The version of Chimera involved
is: <span><a rel="nofollow" shape="rect"
class="yiv8195550976" target="_blank"
href="http://www.cgl.ucsf.edu/chimera/cgi-bin/secure/chimera-get.py?file=linux_x86_64/chimera-1.14-linux_x86_64.bin"
moz-do-not-send="true">chimera-1.14-linux_x86_64.bin</a></span>
<div><br clear="none">
</div>
</div>
<div dir="ltr">
<div dir="ltr">I am looking forward to getting
your advice on how to solve the issue, and
if <span>libtk8.6.so is what was missing,
how to install it especially in the
directory <span>
/UCSF-chimera64-1.14/lib/python2.7/lib-dynload/.</span></span><br
clear="none">
</div>
<div dir="ltr"><br clear="none">
</div>
<div dir="ltr">Smith<br clear="none">
</div>
<br clear="none">
</div>
</div>
<div><br clear="none">
</div>
</div>
</div>
<div class="yiv8195550976yahoo_quoted"
id="yiv8195550976yahoo_quoted_8731858175">
<div style="font-family:'Helvetica Neue', Helvetica,
Arial, sans-serif;font-size:13px;color:#26282a;">
<div> On Tuesday, August 25, 2020, 8:48:29 AM
GMT+8, Greg Couch <a rel="nofollow"
shape="rect"
class="yiv8195550976moz-txt-link-rfc2396E"
ymailto="mailto:gregc@cgl.ucsf.edu"
target="_blank"
href="mailto:gregc@cgl.ucsf.edu"
moz-do-not-send="true"><gregc@cgl.ucsf.edu></a>
wrote: </div>
<div><br clear="none">
</div>
<div><br clear="none">
</div>
<div>
<div id="yiv8195550976">
<div>
<p>The CHIMERA/bin directory should not be
on your path, nor should you run chimera
when in the CHIMERA/bin directory. As
part of the installation process it asks
you where you want to put a symbolic link
to the chimera binary on your PATH, e.g.,
if /usr/local/bin is on your PATH, then
one of the choices will be
/usr/local/bin/chimera. If you didn't do
that, then you need to use the full path
to the chimera binary. So go back to
your home directory or a directory with
the data you are working on, and run
chimera from there. You can make a
symbolic link to the chimera binary
anytime to make running it easier.</p>
<p>If that still doesn't work, then I would
suspect that there is shared library that
is missing. Run:</p>
<p> ldd
/UCSF-chimera64-1.14/lib/python2.7/lib-dynload/_tkinter.so</p>
<p>And look for missing libraries. Then use
your Linux distribution's package manager
to install it. And please let everyone
know which libraries are missing. And
also please share which version of Linux
you are using. With that information, we
should be able to figure out which system
packages are missing.<br clear="none">
</p>
<p> HTH,</p>
<p> Greg<br clear="none">
</p>
<div class="yiv8195550976yqt5702304131"
id="yiv8195550976yqt52485">
<div class="yiv8195550976moz-cite-prefix">On
8/24/2020 5:07 AM, Smith Lee wrote:<br
clear="none">
</div>
<blockquote type="cite"> </blockquote>
</div>
</div>
<div class="yiv8195550976yqt5702304131"
id="yiv8195550976yqt04102">
<div>
<div class="yiv8195550976yahoo-style-wrap"
style="font-family:Helvetica Neue,
Helvetica, Arial,
sans-serif;font-size:13px;">
<div dir="ltr">
<div><span style="font-size:12.0pt;"
lang="EN-US">Dear All,</span>
<p
class="yiv8195550976ydp8588767MsoNormal"><span
style="font-size:12.0pt;"
lang="EN-US"></span><span
style="font-size:12.0pt;"
lang="EN-US">From <a
rel="nofollow" shape="rect"
class="yiv8195550976moz-txt-link-freetext"
target="_blank"
href="https://www.cgl.ucsf.edu/chimera/download.html"
moz-do-not-send="true">https://www.cgl.ucsf.edu/chimera/download.html</a>
I have downloaded the
chimera-1.14-linux_x86_64.bin,
and have tried to install it
exactly based on the accompanied
exact "Instructions”. After the
installation completed, I got to
the bin folder, and try to
launch chimera with ./chimera.
However her</span><span
style="font-size:12.0pt;">俄<span
lang="EN-US"> it says the
installed
/UCSF-chimera64-1.14/lib/python2.7/lib-tk/Tkinter.py
was not configured for my
python.</span></span> </p>
<p
class="yiv8195550976ydp8588767MsoNormal"><span
style="font-size:12.0pt;"
lang="EN-US"></span><span
style="font-size:12.0pt;"
lang="EN-US">Will you please let
me know how to configure TK for
my python, which was a
downloaded component of the
chimera package?</span> </p>
<p
class="yiv8195550976ydp8588767MsoNormal"><span
style="font-size:12.0pt;"
lang="EN-US"></span><span
style="font-size:12.0pt;"
lang="EN-US">Best wishes,</span>
</p>
<p
class="yiv8195550976ydp8588767MsoNormal"><span
style="font-size:12.0pt;"
lang="EN-US"></span><span
style="font-size:12.0pt;"
lang="EN-US">Smith</span> </p>
</div>
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class="yiv8195550976mimeAttachmentHeader"></fieldset>
<pre class="yiv8195550976moz-quote-pre">_______________________________________________
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