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<p class="MsoNormal"><span style="font-size:11.0pt">Dear Chimera developers,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I am a research fellow who works at Frederick Biophysics Laboratory and working on an image processing project.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I used Chimera to generate a topographic height volume data from a single plane image.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">You can find the attached file and use a command following to generate the topographic surface.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">% topography #0 height -40 smoothingIteration 5
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">But there is no option for me to fit the atomic model into the surface height volume by using
<b>Fit in Map</b> tools. <o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Can someone help me figure out what’s the issue? Is that possible to fit an atomic model into a height volume created by a single plane image or just simply need multiple planes?
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Thanks in advance. <o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Yun-Tzai<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
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