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Hi Conrad.<br>
<br>
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Thank you for your quick reply, it works ! Additionally do you if it is possible to create a 2d interaction diagram with closest residues.
<br>
<br>
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Best regards <br>
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David </div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Conrad Huang <conrad@cgl.ucsf.edu><br>
<b>Sent:</b> Monday, April 6, 2020 12:02:09 PM<br>
<b>To:</b> David Ricardo Figueroa Blanco <dr.figueroa10@uniandes.edu.co>; chimera-users@cgl.ucsf.edu <chimera-users@cgl.ucsf.edu><br>
<b>Subject:</b> Re: [Chimera-users] 2D diagram and CDK-Depiction.jar</font>
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<div class="PlainText">Hi, David.<br>
<br>
The CDK files were left behind when we upgraded our hardware. They <br>
should be back in place again. Can you please try again and see if it <br>
works? Thanks.<br>
<br>
Conrad<br>
<br>
On 4/5/2020 7:00 PM, David Ricardo Figueroa Blanco wrote:<br>
> Hi!<br>
> <br>
> I am trying to generate 2d diagrams with Dockview from autodock vina <br>
> outputs but I get this problem :<br>
> <br>
> Web Service: cdkdepiction converts either SMILES strings or MOL2 files <br>
> into 2D structure diagrams in PNG format<br>
> Opal service URL: <br>
> <a href="http://webservices.rbvi.ucsf.edu/opal2/services/CDKDepictionService">http://webservices.rbvi.ucsf.edu/opal2/services/CDKDepictionService</a><br>
> Opal job URL: <br>
> <a href="http://webservices.rbvi.ucsf.edu/appCDKDepictionService1586137005272-807576004">
http://webservices.rbvi.ucsf.edu/appCDKDepictionService1586137005272-807576004</a><br>
> CDKDepictionService stderr<br>
> -----<br>
> Error: Unable to access jarfile /usr/local/cdk/CDK-Depiction.jar<br>
> -----<br>
> CDKDepictionService stdout<br>
> -----<br>
> [no output]<br>
> -----<br>
> Structure diagram generation failed; see Reply Log for more information<br>
> <br>
> Any suggestion or needed program to install?<br>
> <br>
> Thank you !<br>
> <br>
> _______________________________________________<br>
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> <br>
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