<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Miriam,<div class=""><br class=""></div><div class=""> We appreciate your long use of Chimera! That bug was fixed 7 years ago. Time to install a new Chimera.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Feb 20, 2020, at 11:46 AM, Miriam Gochin <<a href="mailto:mgochin@lbl.gov" class="">mgochin@lbl.gov</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><span style="font-family: monospace; font-size: 12.675px;" class="">The 2F0-Fc map was created with Phenix. I tried the "vop cover #1 atom #0" command but got the following error:</span><br style="font-family: monospace; font-size: 12.675px;" class=""><br style="font-family: monospace; font-size: 12.675px;" class=""><span style="font-family: monospace; font-size: 12.675px;" class="">NameError: global name 'step' is not defined</span><br style="font-family: monospace; font-size: 12.675px;" class=""><br style="font-family: monospace; font-size: 12.675px;" class=""><span style="font-family: monospace; font-size: 12.675px;" class=""> File "/Applications/Chimera.app/Contents/Resources/share/VolumeFilter/cover.py", line 9, in map_covering_box</span><br style="font-family: monospace; font-size: 12.675px;" class=""><span style="font-family: monospace; font-size: 12.675px;" class=""> g = volume.grid_data(subregion = 'all', step = step, mask_zone = False)</span><br style="font-family: monospace; font-size: 12.675px;" class=""><br style="font-family: monospace; font-size: 12.675px;" class=""><span style="font-family: monospace; font-size: 12.675px;" class="">Hoping to figure out how to make it work.</span><br style="font-family: monospace; font-size: 12.675px;" class=""><br style="font-family: monospace; font-size: 12.675px;" class=""><span style="font-family: monospace; font-size: 12.675px;" class="">Many thanks,</span><br style="font-family: monospace; font-size: 12.675px;" class=""><span style="font-family: monospace; font-size: 12.675px;" class="">---------------------------------</span><br style="font-family: monospace; font-size: 12.675px;" class=""><span style="font-family: monospace; font-size: 12.675px;" class="">Miriam Gochin</span><br style="font-family: monospace; font-size: 12.675px;" class=""><span style="font-family: monospace; font-size: 12.675px;" class="">Touro University California / LBL</span><br style="font-family: monospace; font-size: 12.675px;" class=""><span style="font-family: monospace; font-size: 12.675px;" class=""><a href="mailto:miriam.gochin@tu.edu" target="_blank" class="">miriam.gochin@tu.edu</a></span><div class=""><a href="mailto:mgochin@lbl.gov" class="">mgochin@lbl.gov</a></div><div class=""><span style="font-family: monospace; font-size: 12.675px;" class="">707-638-5463</span> <br class=""></div></div>
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