<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class=""><br class=""></div>Use the Extract button under ‘Shortcuts’ in Segment Map dialog, next to ‘Other Tools’.<div class=""><br class=""></div><div class="">Under ‘Dimensions of new map:’, make sure ‘Same as map…’ is selected. More details here under Tutorial 5 if needed:</div><div class=""><a href="https://github.com/gregdp/segger/tree/master/tutorials" class="">https://github.com/gregdp/segger/tree/master/tutorials</a></div><div class=""><br class=""></div><div class="">Greg</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Jan 20, 2020, at 4:25 AM, jingchuansun <<a href="mailto:jingchuansun@qq.com" class="">jingchuansun@qq.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hello, after segmentation, I can save a selected region to a .mrc file, but the box size is changed. <br class=""></div><div class=""><br class=""></div><div class="">Can I keep the original box size (and the relative position in original map)?</div><div class="">Thanks!<br class="">Jim<br class=""></div><div class="">----------------------------------<br class=""></div><div class=""><a href="http://www.rbvi.ucsf.edu/chimera/current/docs/UsersGuide/framecore.html" class="">http://www.rbvi.ucsf.edu/chimera/current/docs/UsersGuide/framecore.html</a></div><div class=""><a name="top" class=""><h3 class="">Segment Map </h3></a></div><div class=""><b class="">Save selected regions to .mrc file...</b>
save density map masked by the
<a href="http://www.rbvi.ucsf.edu/chimera/current/docs/UsersGuide/selection.html" class="">selected</a> segmentation regions
to an MRC file
(map dimensions set to the minimal box containing the regions)
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