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<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black">Hi Chimera team,</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black">I’m working on a script to automatically render proteins in a complex by attributes (in this case, a number of scores obtained from different immunogenicity prediction
algorithms). I currently have the script outputting attribute files as intended, but ideally I’d like to define the same attributes across all the chains of the model, which are made up of a number of different proteins.</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black">Is there any way for me to define the attribute file, or utilise some functionality to auto-associate an attribute file with all of the chains which have the correct sequence
(similarly to how the sequence alignment input works at the moment?). Currently the attribute file is only using ‘numbered’ coordinates (:1, :2, :3…etc) , rather than the actual sequence.</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black">Since there’s no chain information in the attribute files, I’m not sure how I can go about connecting it to the right structure, other than manually at the moment?</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black">Many thanks,</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black">Joe</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><u><span style="font-size:10.0pt;font-family:"CMU Serif Roman";color:black;mso-fareast-language:EN-GB">
<o:p></o:p></span></u></p>
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"CMU Sans Serif Medium";color:#941100;mso-fareast-language:EN-GB">Dr. Joseph Healey Ph.D. M.Sc. B.Sc. (Hons) MRSB</span><span style="font-family:"CMU Sans Serif Medium";color:#941100;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB">Research Fellow<o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB">Warwick Medical School</span><span style="font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB">University of Warwick</span><span style="font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB">Coventry</span><span style="font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB">CV47AL<br>
Mob: +44 (0) 7536 042620 | Twitter: <a href="https://twitter.com/JRJHealey"><span style="color:#0563C1">@JRJHealey</span></a> | </span><span style="font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB"><a href="http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey"><span style="font-size:10.0pt;color:#0563C1">Website</span></a><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB">Email:
<a href="mailto:J.Healey.1@warwick.ac.uk"><span style="color:#0563C1">J.Healey.1@warwick.ac.uk</span></a> | ORCID: orcid.org/0000-0002-9569-6738</span><span style="font-family:"CMU Sans Serif Medium";color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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