<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Shengyou,<div class=""><br class=""></div><div class=""> The curvature.py script was attached to the Chimera mailing list message you found.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span><a href="http://www.cgl.ucsf.edu/pipermail/chimera-users/2014-January/009580.html" class="">http://www.cgl.ucsf.edu/pipermail/chimera-users/2014-January/009580.html</a></div><div class=""><br class=""></div><div class="">It got renamed with a ".bin" suffix, so after you download you should change the file name to curvature.py. A similar capability is in ChimeraX, the "measure convexity" command</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span><a href="https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/measure.html#convexity" class="">https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/measure.html#convexity</a></div><div class=""><br class=""></div><div class="">Here's an example image using "measure convexity #1" on EMDB 0074.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""></div><div class=""><img apple-inline="yes" id="18795649-753B-48EE-97A3-E8CC48C2624B" src="cid:C5644A42-5171-4280-895A-1DB4CD9E364A@cgl.ucsf.edu" class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Oct 6, 2019, at 7:15 AM, <a href="mailto:huangsy@hust.edu.cn" class="">huangsy@hust.edu.cn</a> wrote:</div><br class="Apple-interchange-newline"><div class=""><p class="">
Hi Tom,
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<br class="">
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I just noticed that you had helped a user about "Coloring EM map by curvature" in UCSF Chimera through some scripts like the following
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<span style="white-space:pre-wrap;" class=""> </span><span style="white-space:pre-wrap;" class=""> open 1grl</span>
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<pre style="white-space:pre-wrap;overflow-wrap:break-word;" class=""> molmap #0 15 grid 2 model #1
select #1
open ~/Desktop/curvature.py
</pre>
Could you please send me the "<span style="white-space:pre-wrap;" class="">curvature.py</span><span style="white-space:pre-wrap;" class="">" file or tell me where to download it?</span><p class="">
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<span style="white-space:pre-wrap;" class="">Thank you very much for your help!</span>
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Best regards,
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<br class="">
</p><p class="">
Shengyou
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--
</p><p class="">
Shengyou Huang, PhD
</p>
<span class=""><p class="">
Professor of Biophysics<br class="">
School of Physics<br class="">
Huazhong University of Science and Technology<br class="">
Email: <a href="mailto:huangsy@hust.edu.cn" target="_blank" class="">huangsy@hust.edu.cn</a><br class="">
Lab web: <a href="http://huanglab.phys.hust.edu.cn/" target="_blank" class="">http://huanglab.phys.hust.edu.cn/</a>
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