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<p>Dear Susanna,</p>
<p>I recommend you to follow this short tutorial.</p>
<p><span style="color: rgb(0, 0, 0); font-family: "Times New
Roman"; font-size: medium; font-style: normal;
font-variant-ligatures: normal; font-variant-caps: normal;
font-weight: 400; letter-spacing: normal; orphans: 2;
text-align: start; text-indent: 0px; text-transform: none;
white-space: normal; widows: 2; word-spacing: 0px;
-webkit-text-stroke-width: 0px; text-decoration-style: initial;
text-decoration-color: initial; display: inline !important;
float: none;"><a class="moz-txt-link-freetext" href="http://www.cgl.ucsf.edu/chimera/videodoc/surfaceresidues/index.html">http://www.cgl.ucsf.edu/chimera/videodoc/surfaceresidues/index.html</a></span></p>
<p><span style="color: rgb(0, 0, 0); font-family: "Times New
Roman"; font-size: medium; font-style: normal;
font-variant-ligatures: normal; font-variant-caps: normal;
font-weight: 400; letter-spacing: normal; orphans: 2;
text-align: start; text-indent: 0px; text-transform: none;
white-space: normal; widows: 2; word-spacing: 0px;
-webkit-text-stroke-width: 0px; text-decoration-style: initial;
text-decoration-color: initial; display: inline !important;
float: none;">Best,</span></p>
<p><span style="color: rgb(0, 0, 0); font-family: "Times New
Roman"; font-size: medium; font-style: normal;
font-variant-ligatures: normal; font-variant-caps: normal;
font-weight: 400; letter-spacing: normal; orphans: 2;
text-align: start; text-indent: 0px; text-transform: none;
white-space: normal; widows: 2; word-spacing: 0px;
-webkit-text-stroke-width: 0px; text-decoration-style: initial;
text-decoration-color: initial; display: inline !important;
float: none;">Omar<br>
</span></p>
<div class="moz-cite-prefix">Il 9/24/2019 3:24 PM, Susy López ha
scritto:<br>
</div>
<blockquote type="cite"
cite="mid:CA+=qGOtnt4kkxrg8g_LzqycUOCEJe0=yFvjm1JB7Pv-2TbnUcw@mail.gmail.com">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<div dir="ltr"><span class="gmail-im" style="color:rgb(80,0,80)">
<p class="MsoNormal" style="margin:0cm 0cm
8pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px">Dear Tom
Goddard</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><br>
</p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px">I would just
like to know if there is any command in Chimera, which
allows me to identify the atoms that are part of the total
solvent accessible surface area (SAS).</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;text-align:justify;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px"> </span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;text-align:justify;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px">I will try to
explain my question with an example.</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;text-align:justify;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px">First,</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
0.0001pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px;color:rgb(31,78,121)">Commands:</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
0.0001pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px;color:rgb(31,78,121)">open
121p</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
0.0001pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px;color:rgb(31,78,121)">select
:62</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
0.0001pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px;color:rgb(31,78,121)">show
sel</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
0.0001pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px;color:rgb(31,78,121)">Select>residue>all
nonstandard</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
0.0001pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px;color:rgb(31,78,121)">Actions>Atoms/Bonds>delete</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
0.0001pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px;color:rgb(31,78,121)">select
:62@OE1</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
0.0001pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px;color:rgb(31,78,121)">surface
sel</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px;color:rgb(31,78,121)"> </span></p>
</span>
<div><img src="cid:part1.1AC50A7B.B1616DBB@gmail.com"
alt="image.png" class="gmail-CToWUd gmail-a6T" tabindex="0"
style="cursor: pointer; outline: 0px;" width="451"
height="301">
<div class="gmail-yj6qo gmail-ajU"
style="outline:none;padding:10px 0px;width:22px;margin:2px
0px 0px">
<div id="gmail-:15s" class="gmail-ajR" tabindex="0"
style="background-color:rgb(232,234,237);border:none;clear:both;line-height:6px;outline:none;width:24px;border-radius:5.5px"><img
class="gmail-ajT"
src="https://ssl.gstatic.com/ui/v1/icons/mail/images/cleardot.gif"
style="background:
url("https://www.gstatic.com/images/icons/material/system/1x/more_horiz_black_20dp.png")
50% 50% / 20px no-repeat; height: 11px; opacity: 0.54;
width: 24px;" moz-do-not-send="true"></div>
</div>
<div class="gmail-adL"><br>
</div>
</div>
<div class="gmail-adL">
<div class="gmail-im" style="color:rgb(80,0,80)">
<p class="MsoNormal" style="margin:0cm 0cm
8pt;text-align:justify;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px"><br>
</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;text-align:justify;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px">As shown in
the image, I have identified an atom that forms the
surface accessible to the solvent. However, to identify
the total atoms of that protein I have to select atom by
atom, which implies a lot of time and more if I have
several proteins.</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;text-align:justify;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px">So, I would
like to know, if it´s possible to obtain a command that
allows me to select all the atoms at the same time,
specifying the atoms that are part of the total solvent
accessible surface area(SAS).</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;text-align:justify;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px"> </span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px">Thank you
(:</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px"> </span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px">kind
regards,</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px">Susanna</span></p>
<p class="MsoNormal" style="margin:0cm 0cm
8pt;line-height:15.6933px;font-size:11pt;font-family:Calibri,sans-serif"><span
style="font-size:14pt;line-height:19.9733px"> </span></p>
</div>
</div>
</div>
<br>
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<pre class="moz-quote-pre" wrap="">_______________________________________________
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