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<div><br class=""><blockquote type="cite" class=""><div class="">On Jul 15, 2019, at 12:01 AM, <a href="mailto:wangdj7@mail.ustc.edu.cn" class="">wangdj7@mail.ustc.edu.cn</a> wrote:</div><br class="Apple-interchange-newline"><div class=""><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" style="background-color: transparent; font-family: "Times New Roman"; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""><font size="4" style="background-color: transparent; font-family: "Times New Roman"; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class="">Dear Chimera<span style="display: inline; float: none; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; orphans: 2; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px;" class=""> developers,</span></font></font></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" style="background-color: transparent; font-family: "Times New Roman"; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></font><font size="4" style="background-color: transparent; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class=""></font><br style="background-color: transparent; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" size="4" style="background-color: transparent; font-family: "Times New Roman"; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class="">I'm so sorry to interrupt you.</font></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" style="background-color: transparent; font-family: "Times New Roman"; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""><font size="4" style="background-color: transparent; font-family: "Times New Roman"; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class="">I have to run Chimera in Linux,but there is no command line of "joint modeles".I need to get 2 modified amino acids or peptides together and not creating crashes.In windows,"joint models" is my best choice,it's very convient and perfect.But in Linux,I tried some command line,such as "combine","bond",but it can't automatically <span style="background-color: transparent; display: inline; float: none; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; orphans: 2; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px;" class="">repositioning the models and the structure was not right.</span></font></font></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" size="4" style="background-color: transparent; font-family: "Times New Roman"; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class="">So,could you please tell me how to use command lines to replace "joint models" function?</font></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" size="4" style="background-color: transparent; font-family: "Times New Roman"; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class="">Thanks in advance</font></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" style="background-color: transparent; font-family: "Times New Roman"; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></font><font size="4" style="background-color: transparent; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class=""></font><br style="background-color: transparent; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" style="background-color: transparent; font-family: "Times New Roman"; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></font><font size="4" style="background-color: transparent; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class=""></font><br style="background-color: transparent; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" style="background-color: transparent; font-family: "Times New Roman"; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></font><font size="4" style="background-color: transparent; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class=""></font><br style="background-color: transparent; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" style="background-color: transparent; font-family: "Times New Roman"; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></font><font size="4" style="background-color: transparent; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class=""></font><br style="background-color: transparent; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" style="background-color: transparent; font-family: "Times New Roman"; font-size: 14px; line-height: 16.8px; padding: 0px; word-wrap: break-word;" class=""><font size="4" style="background-color: transparent; font-family: "Times New Roman"; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class=""> <span style="background-color: transparent; color: rgb(51, 51, 51); display: inline; float: none; font-style: normal; font-variant: normal; font-weight: 400; letter-spacing: normal; orphans: 2; text-align: justify; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px;" class="">Best Regards</span></font></font></div><div style="background-color: transparent; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-variant-east-asian: normal; font-variant-position: normal; font-weight: 400; letter-spacing: normal; line-height: 16.8px; orphans: 2; padding: 0px; text-align: left; text-decoration: none; text-indent: 0px; text-transform: none; -webkit-text-stroke-width: 0px; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><font face="
Times New Roman
" size="4" style="background-color: transparent; font-family: "Times New Roman"; font-size: 18.06px; line-height: 21.67px; padding: 0px; word-wrap: break-word;" class=""> Daojiong Wang</font></div><br class="">_______________________________________________<br class="">Chimera-users mailing list: <a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" class="">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br class=""></div></blockquote></div><br class=""></div></body></html>