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<p class="x_MsoNormal">I am still having some trouble. It was working last night but this morning my script started having trouble again.</p>
<p class="x_MsoNormal"> </p>
<p class="x_MsoNormal">'open ' + paths['input'] + '\n'</p>
<p class="x_MsoNormal">'open ' + paths['test'] + '\n'</p>
<p class="x_MsoNormal">move cofr mod #1\n'</p>
<p class="x_MsoNormal">'write relative #0 #1 ' + paths['centered_test'] + '\n'</p>
<p class="x_MsoNormal">'open ' + paths['centered_test'] + '\n</p>
<p class="x_MsoNormal"> </p>
<p class="x_MsoNormal">The objective is to have ‘test’ in line with ‘input’, but when I check the save file it never got moved and is still offset. What is strange is last night it was working fine.</p>
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<p class="x_MsoNormal">Best,</p>
<p class="x_MsoNormal">Ryan</p>
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<p class="x_MsoNormal">Sent from <a href="https://go.microsoft.com/fwlink/?LinkId=550986">
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<div id="x_divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> Elaine Meng <meng@cgl.ucsf.edu><br>
<b>Sent:</b> Wednesday, June 26, 2019 12:40:37 PM<br>
<b>To:</b> Ryan Harlich<br>
<b>Cc:</b> chimera-users@cgl.ucsf.edu BB<br>
<b>Subject:</b> Re: [Chimera-users] Saving .pdb file in location of .mrc file</font>
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<div class="PlainText">Yes, that is explained in the link in my previous message.<br>
<br>
Elaine<br>
<br>
> On Jun 26, 2019, at 9:23 AM, Ryan Harlich <ryanharlich@hotmail.com> wrote:<br>
> <br>
> If you move and save a volume and reopen it, it does not appear in new place but rather original place. If you move and save a .ent/.pdb and reopen it, it appears in new place.<br>
> <br>
> Sent from Mail for Windows 10<br>
> <br>
> From: Elaine Meng <meng@cgl.ucsf.edu><br>
> Sent: Wednesday, June 26, 2019 9:20:21 AM<br>
> To: Ryan Harlich<br>
> Cc: chimera-users@cgl.ucsf.edu<br>
> Subject: Re: [Chimera-users] Saving .pdb file in location of .mrc file<br>
> <br>
> For the others on the list,<br>
> although I’m not sure what solution you hit upon, the issue is discussed here, in “Saving Maps after Fitting” (bottom of page):<br>
> <br>
> <<a href="https://eur02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimera%2Fdocs%2FUsersGuide%2Fsavemodel.html%23afterfitting&data=02%7C01%7C%7C1c4a978faa124ab74e7708d6fa6e2afa%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C636971748409359477&sdata=FnFgKvNsF1uTW3hV5nIkwJdGLKzzFsHlrZm0U3Ra90c%3D&reserved=0">https://eur02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimera%2Fdocs%2FUsersGuide%2Fsavemodel.html%23afterfitting&data=02%7C01%7C%7C1c4a978faa124ab74e7708d6fa6e2afa%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C636971748409359477&sdata=FnFgKvNsF1uTW3hV5nIkwJdGLKzzFsHlrZm0U3Ra90c%3D&reserved=0</a>><br>
> <br>
> Elaine<br>
> -----<br>
> Elaine C. Meng, Ph.D.<br>
> UCSF Chimera(X) team<br>
> Department of Pharmaceutical Chemistry<br>
> University of California, San Francisco<br>
> <br>
> > On Jun 25, 2019, at 6:49 PM, Ryan Harlich <ryanharlich@hotmail.com> wrote:<br>
> > <br>
> > Hi Chimera,<br>
> > <br>
> > I was able to figure this out after several hours. You can disregard the below email.<br>
> > <br>
> > Best,<br>
> > Ryan Harlich<br>
> > <br>
> > Sent from Mail for Windows 10<br>
> > <br>
> > From: Ryan Harlich<br>
> > Sent: Tuesday, June 25, 2019 4:46:11 PM<br>
> > To: chimera-users@cgl.ucsf.edu<br>
> > Subject: Saving .pdb file in location of .mrc file<br>
> > <br>
> > Hi Chimera,<br>
> > <br>
> > I am having a bit of difficulty figuring out how to move the location of a map and save it in that location. I am able to move it but when I save and reopen it is back to where it is. I see I can use molmap and use onGrid to achieve this but this overwrites
gridSpacing 1 which is crucial as I need to set the resolution to 1.<br>
> > <br>
> > So the problem is when I save a molmap with gridSpacing after performing move cofr and reopen it, it is not in the location of my .mrc. If I use onGrid I cannot achieve gridSpacing 1.<br>
> > <br>
> > An alternative if possible would be to have the .ent/.pdb saved to the new location where the .mrc density map is and reopened to this same location because then I can do the rest from there.<br>
> > <br>
> > Best,<br>
> > Ryan Harlich<br>
> > <br>
> > Sent from Mail for Windows 10<br>
> > <br>
> > _______________________________________________<br>
> > Chimera-users mailing list: Chimera-users@cgl.ucsf.edu<br>
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