Hi<div id="yMail_cursorElementTracker_1558517561052">Is the lamagian algorithm used in chimera as a sub tool <br id="yMail_cursorElementTracker_1558517549132"><br><div id="ymail_android_signature"><a id="ymail_android_signature_link" href="https://go.onelink.me/107872968?pid=InProduct&c=Global_Internal_YGrowth_AndroidEmailSig__AndroidUsers&af_wl=ym&af_sub1=Internal&af_sub2=Global_YGrowth&af_sub3=EmailSignature">Sent from Yahoo Mail on Android</a></div> <br> <blockquote style="margin: 0 0 20px 0;"> <div style="font-family:Roboto, sans-serif; color:#6D00F6;"> <div>On Wed, 22 May 2019 at 3:06 AM, Elaine Meng</div><div><meng@cgl.ucsf.edu> wrote:</div> </div> <div style="padding: 10px 0 0 20px; margin: 10px 0 0 0; border-left: 1px solid #6D00F6;"> <div class="yqt7804544516 yQTDBase" id="yqtfd14735"><br clear="none">On May 21, 2019, at 4:38 PM, temban billyhp <<a shape="rect" ymailto="mailto:btemban@yahoo.com" href="mailto:btemban@yahoo.com">btemban@yahoo.com</a>> wrote:<br clear="none">> <br clear="none">> Hi<br clear="none">> During the auto dock vina operation, when building the grid box. What is the unit of the dimensions. I will equally like to know how to find the grid spacing value. <br clear="none">> Best regards. </div><br clear="none"><br clear="none">Chimera questions should be sent to <a shape="rect" ymailto="mailto:chimera-users@cgl.ucsf.edu" href="mailto:chimera-users@cgl.ucsf.edu">chimera-users@cgl.ucsf.edu</a> (CC’d here).<br clear="none"><br clear="none">The Autodock Vina tool in Chimera does not have a grid spacing setting.  It only has the box center and size, which are in X,Y,Z coordinates of your atomic structure.  Atomic structures are generally in Angstrom units.<br clear="none"><<a shape="rect" href="http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/vina/vina.html" target="_blank">http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/vina/vina.html</a>><br clear="none"><br clear="none">Maybe there is a setting to control grid spacing if you downloaded and used the Autodock Vina program directly (not using the tool in Chimera) but I do not know.  You would have to look at the Autodock Vina website for that information.<br clear="none"><<a shape="rect" href="http://vina.scripps.edu/" target="_blank">http://vina.scripps.edu/</a>><br clear="none"><br clear="none">I hope this helps,<br clear="none">Elaine<br clear="none">-----<br clear="none">Elaine C. Meng, Ph.D.                       <br clear="none">UCSF Chimera(X) team<br clear="none">Department of Pharmaceutical Chemistry<br clear="none">University of California, San Francisco<div class="yqt7804544516 yQTDBase" id="yqtfd67145"><br clear="none"><br clear="none"></div> </div> </blockquote></div>