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Hi,
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<div>I want to get rmsd of an interface (constituted by 4 chains in heterotetramer protein) in bound and unbound conformations. so far I am trying to do this by using 'rmsd' command, but i am not sure if its the c-alfa or backbone or the full rmsd.<span style="font-size: 12pt;"> I
get a different rmsd value when I just open the sequences, perform structure </span><span style="font-size: 12pt;">association and then select sequence to get rmsd. </span></div>
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<div><span style="font-size: 12pt;">Is there a command to select residues of different chains (the quaternary interface in my case) and perform either backbone or full rmsd???</span></div>
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<div><span style="font-size: 12pt;">thanks a lot.</span></div>
<div><span style="font-size: 12pt;">best,</span></div>
<div><span style="font-size: 12pt;">arvind.</span></div>
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