<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Rajan,<div class=""><br class=""></div><div class=""> Yes, you would have to measure the center for each frame and use that for the zone coloring. In order to perform a command or sequence of commands each frame you use the “perframe” command.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span><a href="https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/perframe.html" class="">https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/perframe.html</a></div><div class=""><br class=""></div><div class="">Elaine Meng said she tried it and did not get your case to work though, so there may be some unexpected difficulties. But you should try it.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Sep 13, 2018, at 6:54 AM, Rajan Prabu <<a href="mailto:jrajanprabu@gmail.com" class="">jrajanprabu@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class="">Hello again, <div class=""><br class=""></div><div class="">Following another old thread, </div><div class=""><br class=""></div><div class=""><a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-September/012743.html" class="">http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-September/012743.html</a><br class=""></div><div class=""><br class=""></div><div class="">I could morph/play the coordinates and Volume at the same time. The script is given below. </div><div class=""><br class=""></div><div class=""><div class="">----------------------------------------------------</div><div class=""># Open maps and set threshold</div><div class="">open 1.mrc</div><div class="">open 2.mrc</div><div class="">open start_full.pdb</div><div class="">open end_full.pdb</div><div class=""><br class=""></div><div class="">vol #0,1 level .025</div><div class=""><br class=""></div><div class=""># Create a marker for coloring</div><div class="">measure center #2 mark true radius 20 color red</div><div class="">~display #4</div><div class=""><br class=""></div><div class=""># Create morph volume</div><div class="">vop morph #0,1 frames 0 model #5</div><div class=""><br class=""></div><div class=""># Create morph models model #6</div><div class="">morph start #2 frames 200</div><div class="">morph interpolate #3 frames 200</div><div class="">morph movie</div><div class=""><br class=""></div><div class=""># marker on morph</div><div class="">measure center #6 mark true radius 20 color red</div><div class=""><br class=""></div><div class=""># Color near marker</div><div class="">scolor #5 zone #6 range 50</div><div class=""><br class=""></div><div class="">coordset #6 1,100; vop morph #0,1 start 0 playstep 0.01 frames 100 model #6</div></div><div class="">----------------------------------------------------<br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">Still the color is at centre of of the first Frame of morph. If I understand correct I have to measure the centre for each Frame and add marker and color it. But I still can't make it. Any help/directions in this regard would be very helpful. </div><div class=""><br class=""></div><div class="">Thanks in advance for your time and help.</div><div class=""><br class=""></div><div class="">best regards</div><div class="">Rajan </div><div class=""><br class=""></div></div></div></div></div>
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