<div dir="ltr">Hi,<div><br></div><div>I am trying to using headless Chimera on RedHat linux server 7.3 to produce some images. </div><div>But I end up with a segmentation fault. Does anyone have an idea how it comes to this?</div><div>The headless chimera is from <a href="https://www.cgl.ucsf.edu/chimera/download.html" target="_blank">https://www.cgl.ucsf.edu/chimera/download.html</a> (64-bit daily build).</div><div>The test code was taken without changes from <a href="https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/basicPrimer.html" target="_blank">https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/basicPrimer.html</a>.</div><div>Any ideas will be appreciated.</div><div><br></div><div>Best, </div><div>Zhe</div><div><br></div><div>PS: OSMesa 11.2.2 has been installed. </div><div><br></div><div><br></div><div>
<span></span>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Executing chimera_surface.py...</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Processing 6c7m.pdb</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Opening 6c7m.pdb...</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">#0, chain A: kemp eliminase KE07</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">6c7m.pdb opened</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Center of rotation: 0.867528 -1.77985 11.157</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">/software/chimera_headless/bin/mscalc 1.400000 2.000000 1</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">MSMSLIB 1.3 started on <a href="http://ebi-cli-002.ebi.ac.uk" target="_blank">ebi-cli-002.ebi.ac.uk</a></span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Copyright M.F. Sanner (March 2000)</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Compilation flags <span class="m_-6911996100271192826gmail-Apple-converted-space"> </span></span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Surface 6c7m.pdb, category main, probe radius 1.4, vertex density 2</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"><span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>12 connected surface components</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"><span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>Total solvent excluded surface area = 10612</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"><span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>component areas = 10035.4, 126.971, 97.9893, 90.9594, 38.157, 36.4953, 34.1487, 33.7557, 32.681, 30.3253, 29.9037, 25.222</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"><span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>Total solvent accessible surface area = 11324.6</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"><span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>component areas = 11265.5, 25.8506, 19.8737, 10.3135, 0.685134, 0.778238, 0.522429, 0.365982, 0.314644, 0.177358, 0.178001, 0.00214196</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Surface 6c7m.pdb, category main has 12 components</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">/software/chimera_headless/bin/mscalc 1.400000 10.000000 1</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">MSMSLIB 1.3 started on <a href="http://ebi-cli-002.ebi.ac.uk" target="_blank">ebi-cli-002.ebi.ac.uk</a></span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Copyright M.F. Sanner (March 2000)</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Compilation flags <span class="m_-6911996100271192826gmail-Apple-converted-space"> </span></span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">RESTART FROM TRI: 1</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">radius of atom 5 goes from 1.880000 to 1.980000</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">radius of atom 6 goes from 1.880000 to 1.980000</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">radius of atom 1569 goes from 1.420000 to 1.520000</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Partial mode</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">/software/chimera_headless/bin/mscalc 1.400000 10.000000 0</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">MSMSLIB 1.3 started on <a href="http://ebi-cli-002.ebi.ac.uk" target="_blank">ebi-cli-002.ebi.ac.uk</a></span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Copyright M.F. Sanner (March 2000)</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Compilation flags <span class="m_-6911996100271192826gmail-Apple-converted-space"> </span></span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">RESTART FROM TRI: 1</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">radius of atom 5 goes from 1.880000 to 1.980000</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">radius of atom 6 goes from 1.880000 to 1.980000</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">radius of atom 1569 goes from 1.420000 to 1.520000</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Partial mode</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Calculation of some surface components failed.</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">A single component of the surface was calculated correctly - the failure occurred for disconnected<span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>additional components such as inside bubbles.<span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>If the desired surface is already shown, there is no need for concern.<span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>However, if it is not shown, see below for possible fixes.</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Surface calculation frequently fails for large, multi-chain structures. The calculation may be successful if the chains are treated individually, by using the "split" command before generating a surface.<span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>If splitting is not desired or the structure is already a single chain, changing molecular surface parameters in the Selection Inspector or (before surface creation) the New Surfaces category of Preferences may allow the calculation to succeed. More details are given at</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"><a href="http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/surfprobs.html" target="_blank">http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/surfprobs.html</a></span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Surface 6c7m.pdb, category main, probe radius 1.4, vertex density 10</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"><span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>1 connected surface components</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"><span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>Total solvent excluded surface area = 10036.7</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"><span class="m_-6911996100271192826gmail-Apple-converted-space"> </span>Total solvent accessible surface area = 11266.5</span></p>
<p class="m_-6911996100271192826gmail-p2" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9);min-height:17px"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures"></span><br></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Surface 6c7m.pdb, category main has 1 components</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Rendering high resolution image...</span></p>
<p class="m_-6911996100271192826gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-weight:normal;font-stretch:normal;line-height:normal;font-family:Monaco;color:rgb(250,255,253);background-color:rgba(0,0,0,0.9)"><span class="m_-6911996100271192826gmail-s1" style="font-variant-ligatures:no-common-ligatures">Segmentation fault</span></p>
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