<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Perhaps it was a memory issue somehow. Glad it’s working!<div class=""><br class=""></div><div class="">—Eric<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Jul 5, 2018, at 7:45 PM, David Sáez <<a href="mailto:davidsaez@udec.cl" class="">davidsaez@udec.cl</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class="">Hi Eric,</div><div class=""><br class=""></div><div class="">Thanks for your help. The trajectories were huge, as you supposed, so after stripping some water molecules I was able to visualize the dynamics correctly. <br class=""></div><div class=""><br class=""></div><div class="">Thanks again!<br class=""></div><div class=""><br class=""></div></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On Thu, Jul 5, 2018 at 5:32 PM, Eric Pettersen <span dir="ltr" class=""><<a href="mailto:pett@cgl.ucsf.edu" target="_blank" class="">pett@cgl.ucsf.edu</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word;line-break:after-white-space" class="">Hi David,<div class=""><span class="m_-5640297067447434208Apple-tab-span" style="white-space:pre-wrap"> </span>The files I have on hand work fine in both versions. There were no changes in Amber-format trajectory handling between the 1.12 and 1.13 releases. Are the files involved huge? (i.e. is there any chance you can send them to me...)</div><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""><div class="">
<div style="letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><div class=""><span class="m_-5640297067447434208Apple-tab-span" style="white-space:pre-wrap"> </span>Eric Pettersen</div><div class=""><span class="m_-5640297067447434208Apple-tab-span" style="white-space:pre-wrap"> </span>UCSF Computer Graphics Lab</div></div><br class="m_-5640297067447434208Apple-interchange-newline">
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<div class=""><br class=""><blockquote type="cite" class=""><div class=""><div class="h5"><div class="">On Jul 4, 2018, at 10:24 AM, David Sáez <<a href="mailto:davidsaez@udec.cl" target="_blank" class="">davidsaez@udec.cl</a>> wrote:</div><br class="m_-5640297067447434208Apple-interchange-newline"></div></div><div class=""><div class=""><div class="h5"><div dir="ltr" class=""><div class="">Hello, I am using UCSF Chimera, candidate version 1.13 LInux64. When I load an MD Movie with prmtop and netcdf files (both created using Amber) the software crashes and gives segmentation fault error. In the trajectory dialog box the netcdf format is not shown as an option. <br class=""></div><div class=""><br class=""></div><div class="">With the previous version, I was able to open those files.</div><div class=""><br class=""></div><div class="">Regards.<br class=""></div></div></div></div>
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