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<p class="MsoNormal"><span style="font-size:11.0pt">Hi<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I am trying to write an alias and am curious if I can do the following using command line (in order to include them in the alias):<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<ol style="margin-top:0in" start="1" type="1">
<li class="MsoListParagraph" style="margin-left:0in;mso-list:l0 level1 lfo1"><span style="font-size:11.0pt">Separate chains that belong to the same model – can I change the model # on a single chain from an existing model? For example, I built a DNA duplex,
selected one chain (sel :.A) and tried to change the model # (combine sel model 8 close true) but the new model also includes chain B.<o:p></o:p></span></li><li class="MsoListParagraph" style="margin-left:0in;mso-list:l0 level1 lfo1"><span style="font-size:11.0pt">Change residue number of a residue in a chain. I combined a small molecule to a DNA chain between residues 18 and 19, but after combining, the molecule’s
residue number remains 1. I would like to change it to 19 or 18.<o:p></o:p></span></li><li class="MsoListParagraph" style="margin-left:0in;mso-list:l0 level1 lfo1"><span style="font-size:11.0pt">Following point #2, I also want to assign the new molecule the same chain ID – A. In the pdb file, the chain ID is blank for the newly inserted molecule.<o:p></o:p></span></li></ol>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Thank you for your help. I also want to mention that the Chimera user discussion portal has been very helpful otherwise!<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.5pt;color:black">-- <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Divita Mathur<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Postdoctoral Research Fellow<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Center for Bio/Molecular Science and Engineering<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Naval Research Laboratory<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Washington DC 20375<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">(202) 767-0687 (Office)<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">divita.mathur.ctr.in@nrl.navy.mil</span><o:p></o:p></p>
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