<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">This link has some info on installing gcc 4.9 on CentOS 6: <a href="https://gist.github.com/WisdomFusion/a60285c8f7cd9faf06ef8c9244133219" class="">https://gist.github.com/WisdomFusion/a60285c8f7cd9faf06ef8c9244133219</a><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div><div class=""><br class=""></div></div>
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<div><br class=""><blockquote type="cite" class=""><div class="">On Mar 27, 2018, at 9:04 PM, #TOFAYEL AHMED# <<a href="mailto:TOFAYEL001@e.ntu.edu.sg" class="">TOFAYEL001@e.ntu.edu.sg</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div id="divtagdefaultwrapper" dir="ltr" style="font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; font-size: 10pt; font-family: Verdana, Geneva, sans-serif;" class="">Hi Conrad, Eric and Elaine,<div class=""><br class=""></div><div class="">Thanks so much for your valuable inputs. I will try to give ChimeraX a shot. From the ChimeraX download page, it looks like installation is difficult in CentOS. I am running CentOS 6.6 with gcc 4.4.7 in my workstation. <span style="font-family: Verdana, Geneva, sans-serif, EmojiFont, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 13.3333330154419px;" class="">Any upfront </span><span style="font-family: Verdana, Geneva, sans-serif, EmojiFont, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 13.3333330154419px;" class="">suggestion from your side before I try to install? Sorry, I am not a very techie person !</span></div><div class=""><br class=""></div><div class="">Best regards,</div><div class="">Tofayel</div><div class=""><br class=""></div></div><hr tabindex="-1" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; display: inline-block; width: 526.25px;" class=""><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""></span><div id="divRplyFwdMsg" dir="ltr" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><font face="Calibri, sans-serif" style="font-size: 11pt;" class=""><b class="">From:</b><span class="Apple-converted-space"> </span>Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" class="">meng@cgl.ucsf.edu</a>><br class=""><b class="">Sent:</b><span class="Apple-converted-space"> </span>Wednesday, March 28, 2018 4:26:04 AM<br class=""><b class="">To:</b><span class="Apple-converted-space"> </span>#TOFAYEL AHMED#<br class=""><b class="">Cc:</b><span class="Apple-converted-space"> </span>Chimera User Help<br class=""><b class="">Subject:</b><span class="Apple-converted-space"> </span>Re: [Chimera-users] Reading and saving large files in chimera</font><div class=""> </div></div><div class="BodyFragment" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><font size="2" class=""><span style="font-size: 11pt;" class=""><div class="PlainText">Using the links in the Log table adds the copies as graphical clones. To get the all-atom copies (which can be colored independently etc.), you’d need to use a similar “sym” command (as using the links echoes in the Log) but with the option “copies true”.<br class=""><br class=""><<a href="http://rbvi.ucsf.edu/chimerax/docs/user/commands/sym.html#copies" class="">http://rbvi.ucsf.edu/chimerax/docs/user/commands/sym.html#copies</a>><br class=""><br class="">(Pardon my terseness… arm injury, difficult to type.)<br class=""><br class="">Elaine<br class=""><br class="">> On Mar 27, 2018, at 1:14 PM, Eric Pettersen <<a href="mailto:pett@cgl.ucsf.edu" class="">pett@cgl.ucsf.edu</a>> wrote:<br class="">><span class="Apple-converted-space"> </span><br class="">> Also, just FYI, if you open the regular 5ire mmCIF entry (i.e. asymmetric unit) in ChimeraX, it will show a table of possible assemblies (as listed in the mmCIF file). The first entry in the table is the complete icosahedral virus assembly. If you click on that link in the table it will show the complete assembly.<br class="">><span class="Apple-converted-space"> </span><br class="">> —Eric<br class="">><span class="Apple-converted-space"> </span><br class="">> Eric Pettersen<br class="">> UCSF Computer Graphics Lab<br class="">><span class="Apple-converted-space"> </span></div></span></font></div></div></blockquote></div><br class=""></div></body></html>