<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">Dear Andrew,</div><div class=""><br class=""></div><div class="">In addition to what Dr. Meng suggested in the previous email. I think this tutorial link may help you <a href="http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/frametut.html" class="">http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/frametut.html</a> </div><div class=""><br class=""></div><div class="">For example:</div><div class=""><br class=""></div><div class="">color black :* (will color everything black)</div><div class="">color red :100 (will color amino acid 100 positions red) </div><div class="">color blue :500.c (will only color chain C amino acid 500 position blue)</div><div class=""><br class=""></div><div class="">I hope this helps, </div><div class="">David </div><div class=""><br class=""></div><div><blockquote type="cite" class=""><div class="">On Feb 1, 2018, at 11:09 AM, Andrew Cuyegkeng <<a href="mailto:ajcuyegkeng@ucdavis.edu" class="">ajcuyegkeng@ucdavis.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Hello again,<div class="">Sorry for the very vague email.</div><div class=""><br class=""></div><div class="">The protein complex I am looking at has 8 different chains. I want to identify the atoms/residues involved in the interface between two chains and color code the residues involved based on what chain they are on. For example, if we had the following points of contact:</div><div class="">Tyr 100.A <----> Asp 500.C</div><div class="">Lys 200.A <---> Leu 400.D</div><div class=""><br class=""></div><div class="">How can I color the Tyr 100.A and Lys 200.A the same color (since they are on the same chain), and Asp and Leu both different colors? And then how can I make all residues not involved in the interface the same color (like black)? I just want to make all interacting residues on the same chain the same color, and everything that is not interacting the color black.</div><div class=""><br class=""></div><div class="">I hope this clarifies things! I apologize: I just started using the program last week and have gone through the online tutorials, but I'm still unfamiliar with the majority of the tools/commands.</div><div class=""><br class=""></div><div class="">Best,</div><div class="">Andrew</div><div class="gmail_extra"><br class=""><br class=""></div></div>
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