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Chimera team.<br>
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I made the hydrogen bond analysis for the co-crystallized ligand for 1DB1 receptor. it makes on the PDB 6 hydrogen bonds through both oxygen and hydrogen of the hydroxyl group (three of both) with the amino acids residues in the binding site, Also chimera forms
6 but through oxygen of hydroxyl group only. This my first question why? <br>
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The second question is the structure of the Co crystallized Ligand is not correct, when I adjust the bond order of it by Maestro and save it as pdb and reopen it by Chimera, it forms only two hydrogen binds why?
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Please try to help me in this question, because I need it necessary<br>
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Thanks<br>
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<i><b>Mohamed S. Nafie</b></i> <br>
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Assistant lecturer Chemistry Department, <br>
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Faculty of Science, Suez Canal University <br>
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Ismailia, P.O(41522), Egypt<br>
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Mobile: +201065072524<br>
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