<div dir="ltr"><div class="gmail_default" style="font-family:monospace,monospace">Thank you, and how can I get the value of volume in the point where marker is?<br></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><span style="font-family:monospace,monospace">--<br>pozdrawiam serdecznie<br>Michał Kadlof <<a href="mailto:m.kadlof@cent.uw.edu.pl" target="_blank">m.kadlof@cent.uw.edu.pl</a>></span><br></div></div></div></div></div></div>
<br><div class="gmail_quote">2017-11-16 19:17 GMT+01:00 Tom Goddard <span dir="ltr"><<a href="mailto:goddard@sonic.net" target="_blank">goddard@sonic.net</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word;line-break:after-white-space">The Chimera getcrd command will report atom coordinates. In Python code you can get the coordinates for atom a with a.coord or a.xformCoord if you want to include the viewing direction.<div><br></div><div>To specify a point in a density map you usually put a marker on it with the Volume Tracer. A marker is actually and atom so getcrd works for that.</div><div><br></div><div><span class="m_-3151014759128008344Apple-tab-span" style="white-space:pre-wrap"> </span>Tom</div><div><br><div><br><blockquote type="cite"><div><div class="h5"><div>On Nov 16, 2017, at 3:36 AM, Michał Kadlof <<a href="mailto:m.kadlof@cent.uw.edu.pl" target="_blank">m.kadlof@cent.uw.edu.pl</a>> wrote:</div><br class="m_-3151014759128008344Apple-interchange-newline"></div></div><div><div><div class="h5"><div dir="ltr"><div class="gmail_default" style="font-family:monospace,monospace">Hi,</div><div class="gmail_default" style="font-family:monospace,monospace"><br></div><div class="gmail_default" style="font-family:monospace,monospace">1. is there any way to get the exact Cartesian coordinates of any atom directly in Chimera?</div><div class="gmail_default" style="font-family:monospace,monospace"><br></div><div class="gmail_default" style="font-family:monospace,monospace">2. Is there any way to get exact value from exact place inside density volumetric data?<br></div><div class="gmail_default" style="font-family:monospace,monospace"><br clear="all"></div><div><div class="m_-3151014759128008344gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><span style="font-family:monospace,monospace">--<br><div style="font-family:monospace,monospace;display:inline" class="gmail_default">best wishes</div><br>Michał Kadlof <<a href="mailto:m.kadlof@cent.uw.edu.pl" target="_blank">m.kadlof@cent.uw.edu.pl</a>></span><br></div></div></div></div></div></div>
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