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<p class="MsoNormal">Continuing my earlier question.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I tried the suggestions sent to me neither <i><span style="color:red">split</span></i> nor
<i><span style="color:red">surfcat</span></i> seemed to work.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">After some attempts I received this window and <i><span style="color:red">reported the bug<o:p></o:p></span></i></p>
<p class="MsoNormal"><i><span style="color:red"><o:p> </o:p></span></i></p>
<p class="MsoNormal"><img width="443" height="235" style="width:4.6145in;height:2.4479in" id="Picture_x0020_1" src="cid:image001.png@01D2CD74.26A7D780"><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I then tried to use molmap and I did get a surface and saw how by moving the cursor in the molmap window I could get the surface to progressively disappear leaving the selected domains that were colored previously. The surface was for
the entire protein, one of the models #0.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I could also change the surface color.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Then I went looking at some of the tabs on the molmap window and cannot describe the sequence, but ended up with another window that I eventually found out was for visualizing Cryo EM maps. Now I have a surface that is multicolored and
looks like jelly beans. <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Somehow perhaps by selecting one of the models from the command lines, (#0) I was able to pull out a surface of the entire molecule, rotate it etc, and progressively remove the surface, til the selected domains remained.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Stuck!!!<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">This is one model:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><img width="521" height="76" style="width:5.427in;height:.7916in" id="Picture_x0020_3" src="cid:image003.png@01D2CD79.3D09E040"><o:p></o:p></p>
<p class="MsoNormal"><img width="245" height="266" style="width:2.552in;height:2.7708in" id="Picture_x0020_2" src="cid:image004.jpg@01D2CD79.3D09E040"><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><b><i><span style="color:#0070C0">HERE IS ANOTHER which is #1 or #2<o:p></o:p></span></i></b></p>
<p class="MsoNormal"><b><i><span style="color:#0070C0"><o:p> </o:p></span></i></b></p>
<p class="MsoNormal"><img width="206" height="253" style="width:2.1458in;height:2.6354in" id="Picture_x0020_4" src="cid:image005.jpg@01D2CD79.3D09E040"><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><img width="534" height="64" style="width:5.5625in;height:.6666in" id="Picture_x0020_5" src="cid:image006.png@01D2CD79.3D09E040"><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Arthur Szabo<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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