<html><head></head><body><div style="color:#000; background-color:#fff; font-family:Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div id="yui_3_16_0_ym19_1_1492028541676_6492">Thank you, Eric! but I get this error, will it cause later malfunctions?</div><div id="yui_3_16_0_ym19_1_1492028541676_6492" dir="ltr"><br></div><div id="yui_3_16_0_ym19_1_1492028541676_6492" dir="ltr">> chimera/bin/chimera --nogui --script "chimera/bin/pip install scipy"<br></div><div id="yui_3_16_0_ym19_1_1492028541676_7610">Starting extension 'IDLE' failed </div><div id="yui_3_16_0_ym19_1_1492028541676_7610">(and then blah...)</div><div id="yui_3_16_0_ym19_1_1492028541676_7610"><br></div><div id="yui_3_16_0_ym19_1_1492028541676_7610">Thanks again,</div><div id="yui_3_16_0_ym19_1_1492028541676_7610">SL</div><div dir="ltr" id="yui_3_16_0_ym19_1_1492028541676_7611"><br id="yui_3_16_0_ym19_1_1492028541676_7612"></div><div dir="ltr" id="yui_3_16_0_ym19_1_1492028541676_7611"><br></div> <div class="qtdSeparateBR" id="yui_3_16_0_ym19_1_1492028541676_7737"><br><br></div><div class="yahoo_quoted" id="yui_3_16_0_ym19_1_1492028541676_7219" style="display: block;"> <div style="font-family: Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;" id="yui_3_16_0_ym19_1_1492028541676_7218"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;" id="yui_3_16_0_ym19_1_1492028541676_7217"> <div dir="ltr"><font size="2" face="Arial"> On Tuesday, April 11, 2017 1:28 PM, Eric Pettersen <pett@cgl.ucsf.edu> wrote:<br></font></div> <br><br> <div class="y_msg_container" id="yui_3_16_0_ym19_1_1492028541676_7216"><div id="yiv1366939342"><div id="yui_3_16_0_ym19_1_1492028541676_7215">You type that to the Unix shell, the same way you started Chimera. So:<div class="yiv1366939342" id="yui_3_16_0_ym19_1_1492028541676_7285"><br clear="none" class="yiv1366939342"></div><div class="yiv1366939342" id="yui_3_16_0_ym19_1_1492028541676_7287"><span class="yiv1366939342Apple-tab-span" style="white-space:pre;"> </span><whatever command you use to start Chimera> --nogui --script get-pip.py</div><div class="yiv1366939342" id="yui_3_16_0_ym19_1_1492028541676_7283"><br clear="none" class="yiv1366939342"></div><div class="yiv1366939342" id="yui_3_16_0_ym19_1_1492028541676_7281">—Eric</div><div class="yiv1366939342" id="yui_3_16_0_ym19_1_1492028541676_7214"><br clear="none" class="yiv1366939342"><div class="yiv1366939342">
<div class="yiv1366939342" style="color:rgb(0, 0, 0);letter-spacing:normal;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word;"><div class="yiv1366939342"><span class="yiv1366939342Apple-tab-span" style="white-space:pre;"> </span>Eric Pettersen</div><div class="yiv1366939342"><span class="yiv1366939342Apple-tab-span" style="white-space:pre;"> </span>UCSF Computer Graphics Lab</div></div><br clear="none" class="yiv1366939342Apple-interchange-newline">
</div>
<br clear="none" class="yiv1366939342"><div id="yui_3_16_0_ym19_1_1492028541676_7298"><blockquote class="yiv1366939342" type="cite" id="yui_3_16_0_ym19_1_1492028541676_7297"><div class="yiv1366939342yqt5056269139" id="yiv1366939342yqt21607"><div class="yiv1366939342">On Apr 10, 2017, at 6:23 PM, hy liao <<a rel="nofollow" shape="rect" class="yiv1366939342" ymailto="mailto:hl_random@yahoo.com" target="_blank" href="mailto:hl_random@yahoo.com">hl_random@yahoo.com</a>> wrote:</div><br clear="none" class="yiv1366939342Apple-interchange-newline"><div class="yiv1366939342" id="yui_3_16_0_ym19_1_1492028541676_7296"><div class="yiv1366939342" id="yui_3_16_0_ym19_1_1492028541676_7295"><div class="yiv1366939342" style="background-color:rgb(255, 255, 255);font-family:'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif;font-size:16px;" id="yui_3_16_0_ym19_1_1492028541676_7294"><div class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_26173">Hi, this was posted here, but where exactly do I invoke the said chimera command? I open chimera with IDLE; a python shell opens with the following</div><div class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_26173"><br clear="none" class="yiv1366939342"></div><div class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34913">Python 2.7.10 (default, May 4 2016, 01:09:35) </div><div class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34914">[GCC 4.6.2] on linux2</div><div class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34915">Type "copyright", "credits" or "license()" for more information.</div><div class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34916">==== No Subprocess ====</div><div class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34917">>>> </div><div class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34918">>>> import chimera</div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34919">>>></div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34919"><br clear="none" class="yiv1366939342"></div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34919">I tried what the posting said, but got an error</div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_36689">>>> <span class="yiv1366939342" style="font-family:'Courier New';white-space:pre-wrap;">chimera --nogui --script get-pip.py</span></div><pre class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_40156" style="word-wrap:break-word;"><span class="yiv1366939342" style="font-family:'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif;">Traceback (most recent call last):</span><br clear="none" class="yiv1366939342"></pre><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_36691"> File "<pyshell#3>", line 1, in <module></div><pre class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_41913" style="word-wrap:break-word;"> chimera --nogui --script get-pip.py</pre><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_36693">NameError: name 'nogui' is not defined</div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_36694"><br clear="none" class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_36695"></div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_36694">Thanks,</div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_36694">SL</div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_34919"><br clear="none" class="yiv1366939342"></div><div class="yiv1366939342" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_26173"><br clear="none" 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0;font-size:16px;font-family:'Helvetica Neue', Helvetica, Arial, sans-serif;">[Chimera-users] How to install package in chimera python?</h2> <div class="yiv1366939342card-description" style="font-size:11px;line-height:15px;color:#999;"></div> </td><td colspan="1" rowspan="1" class="yiv1366939342card-share-container"></td></tr></tbody></table> </td></tr></tbody></table> </a></div><div class="yiv1366939342" id="yui_3_16_0_ym19_1_1492028541676_7293"><br clear="none" class="yiv1366939342"></div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_26173"><br clear="none" class="yiv1366939342"></div><div class="yiv1366939342" dir="ltr" id="yiv1366939342yui_3_16_0_ym19_1_1491870728257_26173"><br clear="none" class="yiv1366939342"></div></div></div>_______________________________________________<br clear="none" class="yiv1366939342">Chimera-users mailing list: <a rel="nofollow" shape="rect" class="yiv1366939342" ymailto="mailto:Chimera-users@cgl.ucsf.edu" 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