<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">You type that to the Unix shell, the same way you started Chimera. So:<div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span><whatever command you use to start Chimera> --nogui --script get-pip.py</div><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div></div><br class="Apple-interchange-newline">
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<br class=""><div><blockquote type="cite" class=""><div class="">On Apr 10, 2017, at 6:23 PM, hy liao <<a href="mailto:hl_random@yahoo.com" class="">hl_random@yahoo.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><!--[if gte mso 9]><xml><o:OfficeDocumentSettings><o:AllowPNG/><o:PixelsPerInch>96</o:PixelsPerInch></o:OfficeDocumentSettings></xml><![endif]--><div class=""><div style="background-color: rgb(255, 255, 255); font-family: 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 16px;" class=""><div id="yui_3_16_0_ym19_1_1491870728257_26173" class="">Hi, this was posted here, but where exactly do I invoke the said chimera command? I open chimera with IDLE; a python shell opens with the following</div><div id="yui_3_16_0_ym19_1_1491870728257_26173" class=""><br class=""></div><div id="yui_3_16_0_ym19_1_1491870728257_34913" class="">Python 2.7.10 (default, May 4 2016, 01:09:35) </div><div id="yui_3_16_0_ym19_1_1491870728257_34914" class="">[GCC 4.6.2] on linux2</div><div id="yui_3_16_0_ym19_1_1491870728257_34915" class="">Type "copyright", "credits" or "license()" for more information.</div><div id="yui_3_16_0_ym19_1_1491870728257_34916" class="">==== No Subprocess ====</div><div id="yui_3_16_0_ym19_1_1491870728257_34917" class="">>>> </div><div id="yui_3_16_0_ym19_1_1491870728257_34918" class="">>>> import chimera</div><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_34919" class="">>>></div><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_34919" class=""><br class=""></div><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_34919" class="">I tried what the posting said, but got an error</div><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_36689" class="">>>> <span style="font-family: 'Courier New'; white-space: pre-wrap;" class="">chimera --nogui --script get-pip.py</span></div><pre style="word-wrap: break-word;" id="yui_3_16_0_ym19_1_1491870728257_40156" class=""><span style="font-family: 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif;" class="">Traceback (most recent call last):</span><br class=""></pre><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_36691" class=""> File "<pyshell#3>", line 1, in <module></div><pre style="word-wrap: break-word;" id="yui_3_16_0_ym19_1_1491870728257_41913" class=""> chimera --nogui --script get-pip.py</pre><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_36693" class="">NameError: name 'nogui' is not defined</div><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_36694" class=""><br id="yui_3_16_0_ym19_1_1491870728257_36695" class=""></div><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_36694" class="">Thanks,</div><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_36694" class="">SL</div><div dir="ltr" id="yui_3_16_0_ym19_1_1491870728257_34919" class=""><br class=""></div><div id="yui_3_16_0_ym19_1_1491870728257_26173" class=""><br class=""></div><div id="yui_3_16_0_ym19_1_1491870728257_26173" class=""><br class=""></div><div id="yui_3_16_0_ym19_1_1491870728257_26173" class=""><br class=""></div><div id="yui_3_16_0_ym19_1_1491870728257_26173" dir="ltr" class=""><a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-November/012851.html" class="enhancr2_efd3df9f-8b89-4c4a-d978-10218e102912" id="yui_3_16_0_ym19_1_1491870728257_29656">[Chimera-users] How to install package in chimera python?</a><br class=""></div><div id="yui_3_16_0_ym19_1_1491870728257_31371" class=""><br class=""></div><div id="enhancr2_efd3df9f-8b89-4c4a-d978-10218e102912" class="yahoo-link-enhancr-not-allow-cover ymail-preserve-class ymail-preserve-style yahoo-link-enhancr-card img-overlay-selected" style="max-width:400px;font-family:'Helvetica Neue', Helvetica, Arial, sans-serif;" contenteditable="false" data-url="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-November/012851.html" data-type="yenhancr" data-category="article" data-embed-url="" data-size="medium" dir="ltr"> <a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-November/012851.html" style="text-decoration: none !important;" class="yahoo-enhancr-cardlink" target="_blank" rel="noreferrer" id="yui_3_16_0_ym19_1_1491870728257_31381"> <table class="card-wrapper" cellpadding="0" cellspacing="0" border="0" style="max-width:400px;" id="yui_3_16_0_ym19_1_1491870728257_31380"> <tbody id="yui_3_16_0_ym19_1_1491870728257_31379" class=""><tr id="yui_3_16_0_ym19_1_1491870728257_31378" class=""> <td width="400" id="yui_3_16_0_ym19_1_1491870728257_31377" class=""> <table class="card-info" cellpadding="0" cellspacing="0" border="0" width="100%" style="background:#fff;max-width:400px;border:1px solid #e0e4e9;border-bottom:3px solid #000000;" id="yui_3_16_0_ym19_1_1491870728257_31376"> <tbody id="yui_3_16_0_ym19_1_1491870728257_31375" class=""><tr id="yui_3_16_0_ym19_1_1491870728257_31374" class=""> <td style="vertical-align:top;padding:16px 0 16px 12px;" class=""> </td> <td style="vertical-align:middle;padding:16px 12px;width:99%;" id="yui_3_16_0_ym19_1_1491870728257_31373" class=""> <h2 class="card-title" style="margin:0 0 4px 0;font-size:16px;font-family:'Helvetica Neue', Helvetica, Arial, sans-serif;word-break:break-word;" id="yui_3_16_0_ym19_1_1491870728257_43663">[Chimera-users] How to install package in chimera python?</h2> <div class="card-description" style="font-size:11px;line-height:15px;color:#999;word-break:break-word;"></div> </td> <td class="card-share-container"></td> </tr> </tbody></table> </td> </tr> </tbody></table> </a></div><div class=""><br class=""></div><div id="yui_3_16_0_ym19_1_1491870728257_26173" dir="ltr" class=""><br class=""></div><div id="yui_3_16_0_ym19_1_1491870728257_26173" dir="ltr" class=""><br class=""></div></div></div>_______________________________________________<br class="">Chimera-users mailing list: <a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" class="">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br class=""></div></blockquote></div><br class=""></div></body></html>