<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Jan 29, 2017, at 11:56 AM, Elaine Meng wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hi Kyle,<br class="">Sorry, there is no Chimera command to save marker sets in the cmm format. (As far as I know, the manual page you were looking at is up to date.)<br class=""><br class="">I’m sure it can be done in Python but somebody else would have to shed light on that.<br class="">Best,<br class="">Elaine<br class="">-----<br class="">Elaine C. Meng, Ph.D. <br class="">UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br class="">Department of Pharmaceutical Chemistry<br class="">University of California, San Francisco<br class=""><br class=""><br class=""><blockquote type="cite" class="">On Jan 28, 2017, at 1:46 PM, Kyle Morris wrote:<br class=""><br class="">Dear Chimera dev and community,<br class=""><br class="">I would like to save a marker set from the command line and ultimately do so in a script. Using the write command which I would use for PDB's, marker sets get saved in PDB format, of course. Is there a command to save the marker set as XML .cmm as it would from the volume tracer menu?<br class=""><br class="">I notice at the bottom of the following page this is a suggested development:<br class=""><br class=""><a href="https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/volumepathtracer/volumepathtracer.html" class="">https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/volumepathtracer/volumepathtracer.html</a><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>• supply Python code for reading and writing the XML files containing saved marker sets<br class="">Is it there already and I can't find perhaps?<br class=""><br class="">Thanks for your help as ever!<br class=""><br class="">Best wishes,<br class="">Kyle<br class=""></blockquote><br class=""><br class="">_______________________________________________<br class="">Chimera-users mailing list: <a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" class="">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br class=""><br class=""></div></div></blockquote></div><br class=""></div></body></html>