<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;">OK- thanks.<div>M</div><div><br><div apple-content-edited="true">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div style="letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div style="letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div style="letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div style="letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div style="letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div style="letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><span class="Apple-style-span" style="border-collapse: separate; font-variant: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; border-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-stroke-width: 0px;"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><span class="Apple-style-span" style="border-collapse: separate; font-variant: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; border-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-stroke-width: 0px;"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><i><p style="font-family: GillSans-SemiBoldItalic; margin: 0px;"><font style="font-variant: normal; line-height: normal;">^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^</font></p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px;"><font style="font-variant: normal; line-height: normal;">Melissa S. Jurica, Ph.D.</font></p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px;"><font style="font-variant: normal; line-height: normal;">Professor, </font><span style="text-align: -webkit-auto;">Molecular, Cell & Developmental Biology</span></p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px;"><font style="font-variant: normal; line-height: normal;">Center for Molecular Biology of RNA</font></p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px;"><font style="font-variant: normal; line-height: normal;">University of California, Santa Cruz</font></p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px;"><font style="font-variant: normal; line-height: normal;">1156 High Street</font></p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px;"><font style="font-variant: normal; line-height: normal;">Santa Cruz, CA 95064</font></p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px; font-variant: normal; line-height: normal; min-height: 14px;"><br></p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px;"><font style="font-variant: normal; line-height: normal;">Office: 450 Sinsheimer Labs<span class="Apple-tab-span" style="white-space: pre;"> </span></font>Lab: 434 Sinsheimer Labs </p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px;"><font style="font-variant: normal; line-height: normal;">Office phone (831) 459-4427<span class="Apple-tab-span" style="white-space: pre;"> </span></font><span style="text-align: -webkit-auto;">Lab phone (831) 459-2463<span class="Apple-tab-span" style="white-space: pre;"> </span></span><span style="text-align: -webkit-auto;">Fax (831) 459-3139</span></p><p style="font-family: GillSans-SemiBoldItalic; font-weight: bold; margin: 0px;"><span style="text-align: -webkit-auto;"><a href="http://www.mcd.ucsc.edu/faculty/jurica.html">http://www.mcd.ucsc.edu/faculty/jurica.html</a></span></p><p style="margin: 0px;"><span style="text-align: -webkit-auto;"><font face="Gill Sans">^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^</font></span></p></i></div></span></div></span></div></div></div></div></div></div></div>
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<br><div style=""><div>On Sep 28, 2016, at 2:12 PM, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu">meng@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi Melissa,<br>After you use split, there is no a longer a model with both upper- and lower-case chain IDs (since each model is now only one chain) and so the case is ignored. After splitting you would have to specify by model number instead, e.g. #0.25. It is only in models with both upper- and lower-case chain IDs that the case you type matters.<br>Elaine<br><br><blockquote type="cite">On Sep 28, 2016, at 9:53 AM, Melissa Jurica <<a href="mailto:mjurica@ucsc.edu">mjurica@ucsc.edu</a>> wrote:<br><br>Hmm. If I have a command file with the following, both chains end up being called smb1_b. Am I missing something? Prior to running this I used the “split” command to separate the chains into sub-models.<br><br>setattr m name Brr2_B #0:.B<br>setattr m name smb1_b #0:.b<br><br>Melissa<br><br>On Sep 28, 2016, at 9:43 AM, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu">meng@cgl.ucsf.edu</a>> wrote:<br><br><blockquote type="cite">Hi Melissa,<br>This is already done. Although chain-ID capitalization is ignored when the file has only capitalized IDs, when both are present, the upper- or lower-case that you type is honored. I tested by opening 5GM6, and making sure that the following give different results:<br><br>sel :.a<br>sel :.A<br><br>Best,<br>Elaine<br>----------<br>Elaine C. Meng, Ph.D. <br>UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br>Department of Pharmaceutical Chemistry<br>University of California, San Francisco<br><br><blockquote type="cite">On Sep 27, 2016, at 4:24 PM, Melissa Jurica <<a href="mailto:mjurica@ucsc.edu">mjurica@ucsc.edu</a>> wrote:<br><br>Hi-<br>Is it possible to differentiate between chain ID’s that are in upper vs. lower case (i.e. A vs. a) in the command line? Spliceosome complexes have too many chains (ex. 5GM6).<br>Thanks,<br>Melissa<br></blockquote><br></blockquote></blockquote><br></blockquote></div><br></div></body></html>