<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<style type="text/css" style="display:none;"><!-- P {margin-top:0;margin-bottom:0;} --></style>
</head>
<body dir="ltr">
<div id="divtagdefaultwrapper" style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
<div id="divtagdefaultwrapper" style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
<p>Ah yes now I see. mmaker is what I want. I've figured out the appropriate syntax for the command I'd want to execute in chimera syntax I think.</p>
<p><br>
</p>
<p>In the code snippet below, it seems to me I have 2 options? I can synthesise a string and iterate the mmaker function in chimera syntax with something like:</p>
<p><br>
</p>
<p><br>
</p>
<p></p>
<div> chimera.openModels.open(top_hit, type="PDB")<br>
<br>
# Open model structures<br>
for model_path in model_list:<br>
chimera.openModels.open(model_path,type="PDB")<br>
print("Opened: " + model_path)<br>
<br>
rmsd_file = '{0}.tsv'.format(rmsd)<br>
with open(rmsd_file, "a") as rmsd_output_file:<br>
for j in len(model_list):</div>
<div> match_cmd = 'mmaker #0 #{0} alg nw iter false'.format(j)<br>
runCommand(match_cmd)</div>
<div><br>
</div>
<div># <somewhere in here retrieve the rmsd and append to a result file></div>
<div><br>
</div>
<div>or the other option would be to do the above but avoiding the string synthesis step with something like:</div>
<div>chimera.module.mmaker()</div>
<div><br>
</div>
<div>If the module can be accessed directly? If so which module is the mmaker function within?</div>
<div><br>
</div>
<div><br>
</div>
Though I still don't know how to access the RMSD value from the mmaker function in either of these manners. Would executing mmaker in either such way return a tuple or list where the RMSD is a particular index?</div>
<div id="divtagdefaultwrapper" style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
<br>
</div>
<div id="divtagdefaultwrapper" style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
Looking at your Match script the rmsd was the 3rd value of the tuple in the line:
<div>atoms1, atoms2, rmsd = match(CP_SPECIFIC_SPECIFIC, [(c1, c2)], defaults[MATRIX],"nw", defaults[GAP_OPEN], defaults[GAP_EXTEND],iterate=defaults[ITER_CUTOFF])[0]</div>
<p></p>
<p><br>
</p>
<p>Would the same be true for mmaker?</p>
<p><br>
</p>
<p><br>
</p>
<p>(Sorry to ask so many questions in one go. I don't know what your policy is on whether all related questions should be in the same issue, or whether I should be raising separate ones)</p>
<p><br>
</p>
<p>Thanks again for all your help</p>
<p><br>
</p>
<p><br>
</p>
<div id="Signature">
<div id="divtagdefaultwrapper" style="font-size:12pt; color:#000000; background-color:#FFFFFF; font-family:Calibri,Arial,Helvetica,sans-serif">
Joe Healey<br style="font-size:10pt">
</div>
<div id="divtagdefaultwrapper" style="font-size:12pt; color:#000000; background-color:#FFFFFF; font-family:Calibri,Arial,Helvetica,sans-serif">
<br>
</div>
<div id="divtagdefaultwrapper" style="font-size:12pt; color:#000000; background-color:#FFFFFF; font-family:Calibri,Arial,Helvetica,sans-serif">
<span style="text-decoration:underline"> </span><br>
</div>
<div id="divtagdefaultwrapper" style="font-size:12pt; color:#000000; background-color:#FFFFFF; font-family:Calibri,Arial,Helvetica,sans-serif">
<span style="font-size:10pt">M.Sc. B.Sc. (Hons)</span><br>
</div>
<div id="divtagdefaultwrapper" style="font-size:12pt; color:#000000; background-color:#FFFFFF; font-family:Calibri,Arial,Helvetica,sans-serif">
<span style="font-size:10pt"></span>
<div><span style="font-size:10pt">PhD Student</span></div>
<div><span style="font-size:10pt">MOAC CDT, Senate House</span></div>
<div><span style="font-size:10pt">University of Warwick<br style="">
</span></div>
<div><span style="font-size:10pt">Coventry<br style="">
</span></div>
<div><span style="font-size:10pt">CV47AL<br style="">
Mob: +44 (0) 7536 042620 | </span><span style="font-size:10pt">Email: J.R.J.Healey@warwick.ac.uk</span></div>
<div><span style="font-size:10pt"><br style="">
</span></div>
<div><span style="font-size:10pt">Jointly working in:<br style="">
</span></div>
<div><span style="font-size:10pt"><a href="http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/" id="LPNoLP">Waterfield Lab</a> (<span style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:13.3333330154419px; background-color:rgb(255,255,255)">WMS </span><span style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:13.3333330154419px; background-color:rgb(255,255,255)">Microbiology
and Infecti</span><span style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:13.3333330154419px; background-color:rgb(255,255,255)">on Un</span><span style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:13.3333330154419px; background-color:rgb(255,255,255)">it)</span></span></div>
<div><span style="font-size:10pt">and the <a href="http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/" id="LPNoLP">Gibson Lab</a> (Warwick Chemistry)<br style="">
</span></div>
<div><span style="font-size:10pt"><br style="">
</span></div>
<div><span style="font-size:10pt">Twitter: <a href="https://twitter.com/JRJHealey" id="LPNoLP">
@JRJHealey</a> | </span><span style="font-size:10pt">Website: </span><a href="http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey" style="font-size:10pt" id="LPNoLP">MOAC Page</a></div>
</div>
</div>
<br>
<br>
<div style="color: rgb(0, 0, 0);">
<div>
<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="x_divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> chimera-users-bounces@cgl.ucsf.edu <chimera-users-bounces@cgl.ucsf.edu> on behalf of chimera-users-request@cgl.ucsf.edu <chimera-users-request@cgl.ucsf.edu><br>
<b>Sent:</b> 20 September 2016 19:30<br>
<b>To:</b> chimera-users@cgl.ucsf.edu<br>
<b>Subject:</b> Chimera-users Digest, Vol 161, Issue 19</font>
<div> </div>
</div>
</div>
<font size="2"><span style="font-size:10pt;">
<div class="PlainText">Send Chimera-users mailing list submissions to<br>
chimera-users@cgl.ucsf.edu<br>
<br>
To subscribe or unsubscribe via the World Wide Web, visit<br>
<a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br>
or, via email, send a message with subject or body 'help' to<br>
chimera-users-request@cgl.ucsf.edu<br>
<br>
You can reach the person managing the list at<br>
chimera-users-owner@cgl.ucsf.edu<br>
<br>
When replying, please edit your Subject line so it is more specific<br>
than "Re: Contents of Chimera-users digest..."<br>
<br>
<br>
Today's Topics:<br>
<br>
1. Re: Recursive structure matching and acquisition of<br>
descriptive numbers (Eric Pettersen)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Tue, 20 Sep 2016 11:30:38 -0700<br>
From: Eric Pettersen <pett@cgl.ucsf.edu><br>
To: "Healey, Joe" <J.R.J.Healey@warwick.ac.uk><br>
Cc: "chimera-users@cgl.ucsf.edu BB" <chimera-users@cgl.ucsf.edu><br>
Subject: Re: [Chimera-users] Recursive structure matching and<br>
acquisition of descriptive numbers<br>
Message-ID: <30002D29-1B25-4596-8868-EB3370B72E42@cgl.ucsf.edu><br>
Content-Type: text/plain; charset="windows-1252"<br>
<br>
Hi Joe,<br>
I guess the first thing is that the command equivalent for MatchMaker is ?matchmaker? or ?mmaker?, not ?match?. The ?match? command is for when you know a priori the exact set of atoms you want matched in the two structures. ?matchmaker? is for when
you let Chimera figure out the set of atoms to use based on the sequences and secondary structure. The documentation for the matchmaker command is here:<br>
<br>
<a href="https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/matchmaker.html#options">https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/matchmaker.html#options</a> <<a href="https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/matchmaker.html#options">https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/matchmaker.html#options</a>><br>
<br>
I looked at your script and didn?t see anything obviously wrong. What exactly isn?t working? And unfortunately the answer is no, you can?t run a GUI operation and easily find the command equivalent. ChimeraX will have that capability though.<br>
<br>
?Eric<br>
<br>
<br>
> On Sep 20, 2016, at 5:07 AM, Healey, Joe <J.R.J.Healey@warwick.ac.uk> wrote:<br>
> <br>
> Hi again,<br>
> <br>
> I'm making decent headway with the problem I mentioned before with Jaime's help and the use of pychimera. I'm down to the nitty-gritty of doing the actual RMSD/Match function alignment though and could use a bit more information.<br>
> <br>
> Is there are resource with more information on the commandline implementation of match anywhere other than the link below?<br>
> <br>
> <a href="https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/match.html#options">
https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/match.html#options</a> <<a href="https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/match.html#options">https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/match.html#options</a>><br>
> <br>
> I took a look at Eric's suggestion of the match.py script here: <a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-March/003610.html">
http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-March/003610.html</a> <<a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-March/003610.html">http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-March/003610.html</a>><br>
> <br>
> But I can't quite unwrap the options specified in the command for my uses.<br>
> <br>
> Perhaps another way to ask this is, can I run a command in GUI chimera, and find the EXACT command that was executed?<br>
> <br>
> I've put the semi-complete script in pastebin here <a href="http://pastebin.com/6k9cew55">
http://pastebin.com/6k9cew55</a> <<a href="http://pastebin.com/6k9cew55">http://pastebin.com/6k9cew55</a>> incase it gives you some indication of what I'm attempting to do.<br>
> <br>
> Many thanks<br>
> <br>
> <br>
> Joe Healey<br>
> <br>
> <br>
> M.Sc. B.Sc. (Hons)<br>
> PhD Student<br>
> MOAC CDT, Senate House<br>
> University of Warwick<br>
> Coventry<br>
> CV47AL<br>
> Mob: +44 (0) 7536 042620 | Email: J.R.J.Healey@warwick.ac.uk <<a href="mailto:J.R.J.Healey@warwick.ac.uk">mailto:J.R.J.Healey@warwick.ac.uk</a>><br>
> <br>
> Jointly working in:<br>
> Waterfield Lab <<a href="http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/">http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/</a>> (WMS Microbiology and Infection Unit)<br>
> and the Gibson Lab <<a href="http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/">http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/</a>> (Warwick Chemistry)<br>
> <br>
> Twitter: @JRJHealey <<a href="https://twitter.com/JRJHealey">https://twitter.com/JRJHealey</a>> | Website: MOAC Page <<a href="http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey">http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey</a>><br>
> From: Greg Couch <gregc@cgl.ucsf.edu <<a href="mailto:gregc@cgl.ucsf.edu">mailto:gregc@cgl.ucsf.edu</a>>><br>
> Sent: 08 September 2016 22:43:55<br>
> To: Healey, Joe; chimera-users@cgl.ucsf.edu <<a href="mailto:chimera-users@cgl.ucsf.edu">mailto:chimera-users@cgl.ucsf.edu</a>> BB<br>
> Subject: Re: [Chimera-users] Recursive structure matching and acquisition of descriptive numbers<br>
> <br>
> chimera --nogui can't access graphics. Headless chimera has software OpenGL rendering, so it can be used to create images. Make sure to use the windowsize command to set the size of the framebuffer. Don't know if pychimera cares.<br>
> <br>
> -- Greg<br>
> <br>
> On 09/08/2016 11:53 AM, Healey, Joe wrote:<br>
>> Brilliant, that sounds like the most likely option. I had stumbled across pychimera a couple of days ago while trying to find out if chimera could simply be imported as a module. I initially steered away from it as I don't have sudo rights for the server
where I'm trying to set all this up (couldnt run pip), but I've since sorted it with our sysadmin.<br>
>> <br>
>> On a related point, is running chimera with --nogui equivalent to running headless chimera? I'm just wondering if pychimera is happy with either<br>
>> <br>
>> <br>
>> Joe Healey<br>
>> <br>
>> <br>
>> M.Sc. B.Sc. (Hons)<br>
>> PhD Student<br>
>> MOAC CDT, Senate House<br>
>> University of Warwick<br>
>> Coventry<br>
>> CV47AL<br>
>> Mob: +44 (0) 7536 042620 | Email: J.R.J.Healey@warwick.ac.uk <<a href="mailto:J.R.J.Healey@warwick.ac.uk">mailto:J.R.J.Healey@warwick.ac.uk</a>><br>
>> <br>
>> Jointly working in:<br>
>> Waterfield Lab <<a href="http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/">http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/</a>> (WMS Microbiology and Infection Unit)<br>
>> and the Gibson Lab <<a href="http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/">http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/</a>> (Warwick Chemistry)<br>
>> <br>
>> Twitter: @JRJHealey <<a href="https://twitter.com/JRJHealey">https://twitter.com/JRJHealey</a>> | Website: MOAC Page <<a href="http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey">http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey</a>><br>
>> From: Greg Couch <gregc@cgl.ucsf.edu> <<a href="mailto:gregc@cgl.ucsf.edu">mailto:gregc@cgl.ucsf.edu</a>><br>
>> Sent: 07 September 2016 19:49:19<br>
>> To: Healey, Joe; chimera-users@cgl.ucsf.edu <<a href="mailto:chimera-users@cgl.ucsf.edu">mailto:chimera-users@cgl.ucsf.edu</a>> BB<br>
>> Subject: Re: [Chimera-users] Recursive structure matching and acquisition of descriptive numbers<br>
>> <br>
>> Yes, Chimera's Python code is only "warrantied" to work with its own Python. See question 3b of the Chimera Programming FAQ,https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/faq.html#q3b <<a href="https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/faq.html#q3b">https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/faq.html#q3b</a>>,
for how to install other software into Chimera. Other parts of the FAQ may help you too.<br>
>> <br>
>> That said, Jaime Rodr?guez-Guerra took my previous comments on this subject, <a href="http://www.cgl.ucsf.edu/pipermail/chimera-users/2015-January/010647.html">
http://www.cgl.ucsf.edu/pipermail/chimera-users/2015-January/010647.html</a> <<a href="http://www.cgl.ucsf.edu/pipermail/chimera-users/2015-January/010647.html">http://www.cgl.ucsf.edu/pipermail/chimera-users/2015-January/010647.html</a>>, and came up with
pychimera, <a href="https://pypi.python.org/pypi/pychimera">https://pypi.python.org/pypi/pychimera</a> <<a href="https://pypi.python.org/pypi/pychimera">https://pypi.python.org/pypi/pychimera</a>>. I haven't checked to see how it handles all of my caveats,
and it can't completely without using a modified Python, but I suspect that it would be good enough for you.<br>
>> <br>
>> HTH,<br>
>> <br>
>> Greg<br>
>> <br>
>> On 09/07/2016 07:36 AM, Healey, Joe wrote:<br>
>>> Hi Eric,<br>
>>> <br>
>>> That looks good thank you. I think I'm going about this slightly the wrong way after some investigation however.<br>
>>> <br>
>>> Am I right in thinking that chimera can't be imported in to python inside a normal bash shell, and rather it must be done the other way round? So file manipulation and such must be done by calls to the system from within the chimera python shell, rather
than a python interpreter calling chimera modules in?<br>
>>> <br>
>>> It certainly makes the chimera steps I plan to do much easier, but I was going to include it in a pipeline with some other programs and it makes that a little more taxing (though not insurmountable!).<br>
>>> <br>
>>> Additionally, I plan to invoke this inside a script on a headless linux box (hence why running it through a python script was ideal), so whatever solution I use will need to be 'command line friendly'.<br>
>>> <br>
>>> In effect all I need is the actual algorithm for the matching process to be accessed somehow from a python script.<br>
>>> <br>
>>> Do you have any advice about how best to proceed?<br>
>>> <br>
>>> Many thanks,<br>
>>> <br>
>>> Joe Healey<br>
>>> <br>
>>> <br>
>>> M.Sc. B.Sc. (Hons)<br>
>>> PhD Student<br>
>>> MOAC CDT, Senate House<br>
>>> University of Warwick<br>
>>> Coventry<br>
>>> CV47AL<br>
>>> Mob: +44 (0) 7536 042620 | Email: J.R.J.Healey@warwick.ac.uk <<a href="mailto:J.R.J.Healey@warwick.ac.uk">mailto:J.R.J.Healey@warwick.ac.uk</a>><br>
>>> <br>
>>> Jointly working in:<br>
>>> Waterfield Lab <<a href="http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/">http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/</a>> (WMS Microbiology and Infection Unit)<br>
>>> and the Gibson Lab <<a href="http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/">http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/</a>> (Warwick Chemistry)<br>
>>> <br>
>>> Twitter: @JRJHealey <<a href="https://twitter.com/JRJHealey">https://twitter.com/JRJHealey</a>> | Website: MOAC Page <<a href="http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey">http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey</a>><br>
>>> <br>
>>> From: Eric Pettersen <pett@cgl.ucsf.edu> <<a href="mailto:pett@cgl.ucsf.edu">mailto:pett@cgl.ucsf.edu</a>><br>
>>> Sent: 31 August 2016 18:23<br>
>>> To: Healey, Joe<br>
>>> Cc: chimera-users@cgl.ucsf.edu <<a href="mailto:chimera-users@cgl.ucsf.edu">mailto:chimera-users@cgl.ucsf.edu</a>><br>
>>> Subject: Re: [Chimera-users] Recursive structure matching and acquisition of descriptive numbers<br>
>>> <br>
>>> Hi Joe,<br>
>>> This old chimera-users post has a Python script attachment that demonstrates how to call the underlying MatchMaker function to get the RMSD value programmatically. The mailing list gives the attachment a ?.bin? extension but it?s really a .py file. Just
change the extension if you need to. Let me know if you have any questions about how to adapt the script to your needs?<br>
>>> <br>
>>> <a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-March/003610.html">
http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-March/003610.html</a> <<a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-March/003610.html">http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-March/003610.html</a>><br>
>>> <br>
>>> ?Eric<br>
>>> <br>
>>> Eric Pettersen<br>
>>> UCSF Computer Graphics Lab<br>
>>> <br>
>>>> On Aug 31, 2016, at 3:02 AM, Healey, Joe <J.R.J.Healey@warwick.ac.uk <<a href="mailto:J.R.J.Healey@warwick.ac.uk">mailto:J.R.J.Healey@warwick.ac.uk</a>>> wrote:<br>
>>>> <br>
>>>> Hi,<br>
>>>> <br>
>>>> I have several hundred structure simulations that were performed on our HPC resource. Each simulation has approximately 5 models associated with it. I also have HMM model homologies for each of these proteins.<br>
>>>> <br>
>>>> I would like to use chimera's matchmaker function to compare the simulated structured to their nearest 'real' counterpart with a resolved structure. In order to do this I plan to script chimera to pull in the simulated models as well as the near homolog
and then run the matchmaker algorithm.<br>
>>>> <br>
>>>> My question is: can the RMSD value that is returned in the reply log be 'accessed directly' such that for each match that is performed, I can obtain the RMSD and thus a ranking for the best fitting structures - or will it require parsing the reply log?<br>
>>>> <br>
>>>> Thanks<br>
>>>> <br>
>>>> Joe Healey<br>
>>>> <br>
>>>> <br>
>>>> M.Sc. B.Sc. (Hons)<br>
>>>> PhD Student<br>
>>>> MOAC CDT, Senate House<br>
>>>> University of Warwick<br>
>>>> Coventry<br>
>>>> CV47AL<br>
>>>> Mob: +44 (0) 7536 042620 | Email: J.R.J.Healey@warwick.ac.uk <<a href="mailto:J.R.J.Healey@warwick.ac.uk">mailto:J.R.J.Healey@warwick.ac.uk</a>><br>
>>>> <br>
>>>> Jointly working in:<br>
>>>> Waterfield Lab <<a href="http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/">http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/</a>> (WMS Microbiology and Infection Unit)<br>
>>>> and the Gibson Lab <<a href="http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/">http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/</a>> (Warwick Chemistry)<br>
>>>> <br>
>>>> Twitter: @JRJHealey <<a href="https://twitter.com/JRJHealey">https://twitter.com/JRJHealey</a>> | Website: MOAC Page <<a href="http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey">http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey</a>>_______________________________________________<br>
>>>> Chimera-users mailing list: Chimera-users@cgl.ucsf.edu <<a href="mailto:Chimera-users@cgl.ucsf.edu">mailto:Chimera-users@cgl.ucsf.edu</a>><br>
>>>> Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users">
http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a> <<a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a>><br>
>>> <br>
>>> <br>
>>> _______________________________________________<br>
>>> Chimera-users mailing list: Chimera-users@cgl.ucsf.edu <<a href="mailto:Chimera-users@cgl.ucsf.edu">mailto:Chimera-users@cgl.ucsf.edu</a>><br>
>>> Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users">
http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a> <<a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a>><br>
>> <br>
> <br>
> <br>
<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20160920/d01fa12e/attachment.html">http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20160920/d01fa12e/attachment.html</a>><br>
<br>
------------------------------<br>
<br>
_______________________________________________<br>
Chimera-users mailing list<br>
Chimera-users@cgl.ucsf.edu<br>
<a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br>
<br>
<br>
End of Chimera-users Digest, Vol 161, Issue 19<br>
**********************************************<br>
</div>
</span></font></div>
</div>
</div>
</body>
</html>