<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Jing,<div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>I was, eventually, able to reproduce the problem. It was due to the setting of the phi angle possibly causing the “non-moving” side to move. It’s fixed now and the fix will be in tomorrow’s daily build, so try that and see if it helps.</div><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""></div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div></div><br class="Apple-interchange-newline">
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<br class=""><div><blockquote type="cite" class=""><div class="">On Aug 13, 2016, at 10:56 AM, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" class="">meng@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hi Jing,<br class="">I was not able to reproduce the problem. When I chose “N side” the side with the N atom selected moved, and when I chose “C side” the side with the C atom selected moved.<br class=""><br class="">If the ligand is in the same model as the part it is bound to, they should move together. <br class=""><br class="">In general when you have data-specific issues you should include your data, or else we cannot suggest any specific solution. If you think it is a bug, you should use menu: Help.. Report a Bug and attach any data (such as a Chimera session of the models before the joining) that is needed to reproduce the problem.<br class="">Best,<br class="">Elaine<br class=""><br class="">On Aug 13, 2016, at 10:42 AM, Jie, Jing <<a href="mailto:jiej@oregonstate.edu" class="">jiej@oregonstate.edu</a>> wrote:<br class=""><br class=""><blockquote type="cite" class="">Hi Elaine,<br class="">I tried both selections but the side with the selected N atom (N side) moves in either one. The N side has a ligand bound to it. Is there a way to treat the N side and its ligand as a single object so that even it moves the ligand moves with it? Thank you.<br class="">Jing <br class=""><br class="">On Sat, Aug 13, 2016 at 8:48 AM, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" class="">meng@cgl.ucsf.edu</a>> wrote:<br class="">Hi Jing,<br class="">Just choose the other option, move on N side.<br class=""><br class="">We need to change the wording in the dialog to make it more clear. By “C side” we really meant the side with the selected C atom, even though that becomes the N side of the final joined protein.<br class=""><br class="">I hope this helps,<br class="">Elaine<br class="">-----<br class="">Elaine C. Meng, Ph.D.<br class="">UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br class="">Department of Pharmaceutical Chemistry<br class="">University of California, San Francisco<br class=""><br class="">On Aug 12, 2016, at 6:15 PM, Jie, Jing <<a href="mailto:jiej@oregonstate.edu" class="">jiej@oregonstate.edu</a>> wrote:<br class=""><br class=""><blockquote type="cite" class="">Hi all,<br class="">Is there a way in chimera to fix the position of one model when creating a peptide bond between two models? I selected 'move atoms on C side' but the N side chain still moves. Thanks in advance!<br class="">Jing<br class=""></blockquote><br class=""><br class="">_______________________________________________<br class="">Chimera-users mailing list: <a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" class="">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br class=""></blockquote><br class=""><br class="">_______________________________________________<br class="">Chimera-users mailing list: <a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" class="">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br class=""><br class=""></div></div></blockquote></div><br class=""></div></body></html>