<div style="line-height:1.4">Hi elaine<br>You are right! Thanks very much.<br>Sincerely <br>Liuqing<br><br><br><span style="color:#888;font-size:15px;">发自 </span><a href="http://u.163.com/signature" style="font-size:15px;color:#2e90eb;" target="_blank">网易邮箱大师</a><br><br><br></div>在2016年07月30日 23:55 ，<a href="mailto:meng@cgl.ucsf.edu">Elaine Meng</a>写道：<br><br><blockquote id="ntes-andriodmail-quote" style="margin:0px;padding-left:1ex;border-left:#ccc 1px solid">Hi Liuqing Chen,
<br>In the figure you sent, the part of the ribbon that is highlighted is non-transparent and the rest of the ribbon is partly transparent. For example, if you have already selected the part you want to highlight, then you could invert selection and set transparency of the non-highlighted part, commands something like:
<br>
<br>sel invert
<br>transparency 80 sel
<br>~sel
<br>
<br>You would probably want to turn off depth-cueing because that also gives a dimming effect, e.g. command:
<br>
<br>~set depthcue
<br>
<br>There are different paths to the same result, such as specifying residues directly instead of using a selection:
<br>
<br>transp 80 #0:45-188.A
<br>
<br>Of course you can use a different number than 80, or only make ribbons (not atoms) transparent, or only surface, etc. Details in the manual.
<br><<a href="http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/transparency.html>">http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/transparency.html></a>;
<br>
<br>I hope this helps,
<br>Elaine
<br>-----
<br>Elaine C. Meng, Ph.D.
<br>UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
<br>Department of Pharmaceutical Chemistry
<br>University of California, San Francisco
<br>
<br>On Jul 30, 2016, at 12:31 AM, 陈柳青 <519198561@163.com> wrote:
<br>
<br>> HI
<br>> How to make the figures in attachment, which highlight part of a structure.
<br>> Thanks very much for advise.
<br>> --
<br>> Liuqing Chen
<br>> School of Life Science & Biotechnology
<br>> Minhang Campus
<br>> Shanghai Jiao Tong University
<br>> No. 800 Dongchuan Road
<br>> Shanghai 200240
<br>> P.R. China
<br>> Tel: +86 21 34207247
<br>>
<br>> <捕获.PNG>
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