<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Yes, could you submit a bug report (as outlined by Elaine below) and attach your preferences file? If I set Model Panel to autostart, I get the “Starting extension 'Model Panel' failed” message, but no Python traceback. So it’s some other tool that’s the problem and your preferences file will allow me to determine the culprit. Your preferences file is /Users/danpf/.chimera/preferences.<div class=""><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div></div><br class="Apple-interchange-newline">
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<br class=""><div><blockquote type="cite" class=""><div class="">On Jul 25, 2016, at 10:28 AM, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" class="">meng@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hi Daniel,<br class="">Hmm, I’m not aware of other startup options to prevent such errors in nogui mode. It may simply be necessary to use a different preferences file ( you can have multiple ones and specify the one to use with the —preferences startup option ) without autostarts for running Chimera in nogui mode.<br class=""><<a href="http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/options.html" class="">http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/options.html</a>><br class=""><br class="">You could report this as a bug with Help… Report a Bug in the menu (GUI version, of course) or the address <a href="mailto:chimera-bugs@cgl.ucsf.edu" class="">chimera-bugs@cgl.ucsf.edu</a> . Even though the problem seems to be with the nogui version, the menu approach is useful because it automatically includes Chimera version and platform information. Either way, you could just paste in what you wrote in this message. Since I’m no help in this case, reporting a bug is good to make sure that the right people see it (although some are currently away, so it may be few days before there is any response), and to get it into our bug-tracking system.<br class=""><br class="">Sorry for the inconvenience,<br class="">Elaine<br class="">----------<br class="">Elaine C. Meng, Ph.D. <br class="">UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br class="">Department of Pharmaceutical Chemistry<br class="">University of California, San Francisco<br class=""><br class=""><blockquote type="cite" class="">On Jul 21, 2016, at 12:44 PM, Daniel P Farrell <<a href="mailto:danpf@uw.edu" class="">danpf@uw.edu</a>> wrote:<br class=""><br class="">Hello,<br class=""><br class="">I don't know if maybe i'm doing something wrong, or if there's a problem, but I'm on a mac el capitan 10.11.6 and I'm getting these weird errors when I try to start chimera in nogui mode. <br class=""><br class="">I usually set various tools to auto-start once I start chimera, but recently I was messing around and added a few, and now I'm getting these errors when i start chimera via --nogui. Problem is, I don't know which one is causing the seg fault, but I feel like it shouldn't be calling these gui options with the nogui options on anyway. Once I started getting these errors I went to Favorites->add to favorites/toolbar->reset & save, and now I don't get the segfault. I do get a few other errors if I adda few back to the auto start / on toolbar options.<br class=""><br class="">chimera production version 1.11 (build 41179) 2016-07-15 05:43:21 UTC<br class=""><br class="">with many auto-start options on<br class="">"""<br class=""><blockquote type="cite" class="">chimera --nogui<br class=""></blockquote>Exception in Tkinter callback<br class="">Traceback (most recent call last):<br class=""> File "/Users/danpf/Desktop/Chimera.app/Contents/Resources/lib/python2.7/lib-tk/Tkinter.py", line 1538, in __call__<br class=""> return self.func(*args)<br class=""> File "/Users/danpf/Desktop/Chimera.app/Contents/Resources/lib/python2.7/lib-tk/Tkinter.py", line 589, in callit<br class=""> func(*args)<br class=""> File "/Users/danpf/Desktop/Chimera.app/Contents/Resources/share/chimera/baseDialog.py", line 280, in _initialPositionCheck<br class=""> if not preferences.get(GENERAL, DIALOG_PLACEMENT):<br class=""> File "/Users/danpf/Desktop/Chimera.app/Contents/Resources/share/chimera/preferences/base.py", line 607, in get<br class=""> return self._category[category].get(name,<br class="">KeyError: 'General'<br class="">[1] 1045 segmentation fault ~/Desktop/Chimera.app/Contents/MacOS/chimera --nogui<br class="">"""<br class="">after removing most auto-start options<br class="">"""<br class=""><blockquote type="cite" class="">chimera --nogui<br class=""></blockquote>Exception in Tkinter callback<br class="">Traceback (most recent call last):<br class=""> File "/Applications/Chimera.app/Contents/Resources/lib/python2.7/lib-tk/Tkinter.py", line 1538, in __call__<br class=""> return self.func(*args)<br class=""> File "/Applications/Chimera.app/Contents/Resources/lib/python2.7/lib-tk/Tkinter.py", line 589, in callit<br class=""> func(*args)<br class=""> File "/Applications/Chimera.app/Contents/Resources/share/chimera/baseDialog.py", line 280, in _initialPositionCheck<br class=""> if not preferences.get(GENERAL, DIALOG_PLACEMENT):<br class=""> File "/Applications/Chimera.app/Contents/Resources/share/chimera/preferences/base.py", line 607, in get<br class=""> return self._category[category].get(name,<br class="">KeyError: 'General'<br class="">Starting extension 'Model Panel' failed<br class=""><br class="">Starting extension 'Keyboard Shortcuts' failed<br class=""><br class="">Starting extension 'IDLE' failed<br class=""><br class=""><blockquote type="cite" class=""><br class=""></blockquote><br class="">"""<br class="">should I be adding a different flag or something when I start chimera via nogui?<br class=""><br class="">Thanks,<br class="">Dan<br class=""></blockquote><br class=""><br class="">_______________________________________________<br class="">Chimera-users mailing list: <a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" class="">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br class=""><br class=""></div></div></blockquote></div><br class=""></div></div></body></html>