<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi,<div class=""><br class=""></div><div class="">I have an ion in a membrane transporter which I am simulating in MD, now, I need in order to pull the ion outside the transporter to use a vector to identify a water molecule which is exactly in the direction of the exit tunnel. For that purpose I need to draw such a vector or to at least identify a water molecule in the right direction. Can Chimera help me with that?</div><div class=""><br class=""></div><div class="">I mean is there a way to identify which water is on the exact pathway of the ion exit?</div><div class=""><br class=""></div><div class="">How can I do it?</div><div class=""><br class=""></div><div class="">Thanks a lot in advance,</div><div class=""><br class=""></div><div class="">Fabian</div><div class=""><div class="">
<div style="color: rgb(0, 0, 0); font-family: Arial; font-size: 18px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><br class="Apple-interchange-newline"><br class=""></div><div style="color: rgb(0, 0, 0); font-family: Arial; font-size: 18px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Fabian Glaser</div><div style="color: rgb(0, 0, 0); font-family: Arial; font-size: 18px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Head of the Structural Bioinformatics section <br class=""><br class=""></div><div style="color: rgb(0, 0, 0); font-family: Arial; font-size: 18px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Bioinformatics Knowledge Unit - BKU</div><div style="color: rgb(0, 0, 0); font-family: Arial; font-size: 18px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">The Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering<br class="">Technion - Israel Institute of Technology, Haifa 32000, ISRAEL</div><div style="color: rgb(0, 0, 0); font-family: Arial; font-size: 18px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><br class=""></div><div style="color: rgb(0, 0, 0); font-family: Arial; font-size: 18px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">fglaser at technion dot ac dot il<br class="">Tel: +972 4 8293701<br class=""><a href="http://bku.technion.ac.il" class="">http://bku.technion.ac.il</a><br class=""><br class=""></div>
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