<div dir="ltr">Hi,<div><br></div><div>Thanks very much for that info. You are correct, the latest version doesn&#39;t have this bug.</div><div><br></div><div>Best Regards,</div><div>Subha</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jun 20, 2016 at 1:12 PM, Eric Pettersen <span dir="ltr">&lt;<a href="mailto:pett@cgl.ucsf.edu" target="_blank">pett@cgl.ucsf.edu</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hi Subha,<div><span style="white-space:pre-wrap">        </span>This problem was fixed 11 months ago, so please update to a newer version of Chimera.  Also, please report bugs by using the “Report A Bug” entry in Chimera’s Help menu rather than sending mail to the chimera-users list.  Thanks!</div><div><br></div><div>—Eric</div><div><br></div><div><br><div>
<div style="color:rgb(0,0,0);letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word"><div><span style="white-space:pre-wrap">        </span>Eric Pettersen</div><div><span style="white-space:pre-wrap">        </span>UCSF Computer Graphics Lab</div></div><br>

</div>
<br><div><blockquote type="cite"><div><div class="h5"><div>On Jun 20, 2016, at 10:19 AM, Subha Kalyaanamoorthy &lt;<a href="mailto:kalyaana@ualberta.ca" target="_blank">kalyaana@ualberta.ca</a>&gt; wrote:</div><br></div></div><div><div><div class="h5"><div dir="ltr">Hi There,<div><br></div><div>I am trying to run charge calculation using Antechamber in chimera, but getting an error related to library not found.</div><div>_______________________</div><div><br></div><div><div>Running ANTECHAMBER command: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/antechamber -ek qm_theory=&#39;AM1&#39;, -i /var/folders/pq/d4fvmdj542gcnqqjbfm554hr0000gt/T/tmpJCy8sw/ante.in.mol2 -fi mol2 -o /var/folders/pq/d4fvmdj542gcnqqjbfm554hr0000gt/T/tmpJCy8sw/ante.out.mol2 -fo mol2 -c bcc -nc 1 -j 5 -s 2</div><div>(UNK) </div><div><br></div><div>(UNK) dyld: Library not loaded: /usr/local/lib/libquadmath.0.dylib</div><div><br></div><div>(UNK)   Referenced from: /Applications/Chimera.app/Contents/Resources/lib/libgfortran.3.dylib</div><div><br></div><div>(UNK)   Reason: image not found</div><div><br></div><div>(UNK) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o <a href="http://antechamber_bond_type.ac/" target="_blank">ANTECHAMBER_BOND_TYPE.AC</a> -f ac</div><div><br></div><div>(UNK) </div><div><br></div><div>(UNK) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/atomtype -i ANTECHAMBER_AC.AC0 -o <a href="http://antechamber_ac.ac/" target="_blank">ANTECHAMBER_AC.AC</a> -p gaff</div><div><br></div><div>(UNK) Total number of electrons: 302; net charge: 1</div><div><br></div><div>(UNK) </div><div><br></div><div>(UNK) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i <a href="http://sqm.in/" target="_blank">sqm.in</a> -o sqm.out</div><div><br></div><div>(UNK) Error: cannot run &quot;/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i <a href="http://sqm.in/" target="_blank">sqm.in</a> -o sqm.out&quot; of bcc() in charge.c properly, exit</div><div><br></div><div>Failure running ANTECHAMBER for residue UNK</div><div>Check reply log for details</div><div>-----------------------</div><div><br></div><div>FYI, I am running on OS X EI Capitan version 10.11.5</div><div><br></div><div>Thanks,</div><div>Subha</div>
</div></div></div></div>
_______________________________________________<br>Chimera-users mailing list: <a href="mailto:Chimera-users@cgl.ucsf.edu" target="_blank">Chimera-users@cgl.ucsf.edu</a><br>Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" target="_blank">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br></div></blockquote></div><br></div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr">Dr. Subha Kalyaanamoorthy<div>Post Doctoral Fellow</div><div>Faculty of Pharmacy and Pharmaceutical Sciences</div><div>University of Alberta</div><div>Edmonton, Canada.</div><div><br></div></div></div>
</div>