<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Subha,<div class=""><span class="Apple-tab-span" style="white-space:pre">        </span>This problem was fixed 11 months ago, so please update to a newer version of Chimera. &nbsp;Also, please report bugs by using the “Report A Bug” entry in Chimera’s Help menu rather than sending mail to the chimera-users list. &nbsp;Thanks!</div><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""></div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;">        </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;">        </span>UCSF Computer Graphics Lab</div></div><br class="Apple-interchange-newline">

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<br class=""><div><blockquote type="cite" class=""><div class="">On Jun 20, 2016, at 10:19 AM, Subha Kalyaanamoorthy &lt;<a href="mailto:kalyaana@ualberta.ca" class="">kalyaana@ualberta.ca</a>&gt; wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Hi There,<div class=""><br class=""></div><div class="">I am trying to run charge calculation using Antechamber in chimera, but getting an error related to library not found.</div><div class="">_______________________</div><div class=""><br class=""></div><div class=""><div class="">Running ANTECHAMBER command: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/antechamber -ek qm_theory='AM1', -i /var/folders/pq/d4fvmdj542gcnqqjbfm554hr0000gt/T/tmpJCy8sw/ante.in.mol2 -fi mol2 -o /var/folders/pq/d4fvmdj542gcnqqjbfm554hr0000gt/T/tmpJCy8sw/ante.out.mol2 -fo mol2 -c bcc -nc 1 -j 5 -s 2</div><div class="">(UNK)&nbsp;</div><div class=""><br class=""></div><div class="">(UNK) dyld: Library not loaded: /usr/local/lib/libquadmath.0.dylib</div><div class=""><br class=""></div><div class="">(UNK) &nbsp; Referenced from: /Applications/Chimera.app/Contents/Resources/lib/libgfortran.3.dylib</div><div class=""><br class=""></div><div class="">(UNK) &nbsp; Reason: image not found</div><div class=""><br class=""></div><div class="">(UNK) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o <a href="http://antechamber_bond_type.ac/" class="">ANTECHAMBER_BOND_TYPE.AC</a> -f ac</div><div class=""><br class=""></div><div class="">(UNK)&nbsp;</div><div class=""><br class=""></div><div class="">(UNK) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/atomtype -i ANTECHAMBER_AC.AC0 -o <a href="http://antechamber_ac.ac/" class="">ANTECHAMBER_AC.AC</a> -p gaff</div><div class=""><br class=""></div><div class="">(UNK) Total number of electrons: 302; net charge: 1</div><div class=""><br class=""></div><div class="">(UNK)&nbsp;</div><div class=""><br class=""></div><div class="">(UNK) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i <a href="http://sqm.in/" class="">sqm.in</a> -o sqm.out</div><div class=""><br class=""></div><div class="">(UNK) Error: cannot run "/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i <a href="http://sqm.in/" class="">sqm.in</a> -o sqm.out" of bcc() in charge.c properly, exit</div><div class=""><br class=""></div><div class="">Failure running ANTECHAMBER for residue UNK</div><div class="">Check reply log for details</div><div class="">-----------------------</div><div class=""><br class=""></div><div class="">FYI, I am running on OS X EI Capitan version 10.11.5</div><div class=""><br class=""></div><div class="">Thanks,</div><div class="">Subha</div>
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