<div dir="ltr">Hi Elaine,<div><br></div><div>Thank you for your help, but it didn't work...</div><div>I want the protein - target.pdb (#0) - and the model (#1.1), so I selected these ones and in the name I wrote docking1.1.pdb and the error meaage appeared again...</div><div><br></div><div><br></div><div>Best regards,</div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">2016-06-16 18:02 GMT+01:00 Elaine Meng <span dir="ltr"><<a href="mailto:meng@cgl.ucsf.edu" target="_blank">meng@cgl.ucsf.edu</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Elza,<br>
This is not a bug, just a question (so it should go to the chimera-users email address only, not chimera-bugs).<br>
<br>
Literally, you must enter a name that includes either “$name” or “$number” into the output-filename area. Then that part will be replaced by the model name or model number of the individual docking, to create multiple different output filenames. You can’t just enter a name without one of those because multiple names are required for multiple output files, not a single name.<br>
<br>
You can see the model names and model numbers of the docking results in the “Save models” area of the PDB-saving dialog (Chimera menu: File… Save PDB).<br>
<br>
For example, if you enter File name in the PDB-saving dialog as:<br>
<br>
docking$number.pdb<br>
<br>
It will write model #1.1 to a file named docking1.1.pdb, model #1.2 to a file named docking1.2.pdb, etc.<br>
<br>
I hope this helps,<br>
Elaine<br>
----------<br>
Elaine C. Meng, Ph.D.<br>
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<div class="HOEnZb"><div class="h5"><br>
> On Jun 16, 2016, at 3:48 AM, Elza Sofia Fonseca <<a href="mailto:fonseca.ess@gmail.com">fonseca.ess@gmail.com</a>> wrote:<br>
><br>
> Dear all,<br>
><br>
> I am Elza Fonseca, a PhD student of the University of Porto and I am now learning to do dockings.<br>
><br>
> I am using Chimera for open the results from SwissDock and I would like to save it like a multiple file. However I always get the same error message:<br>
> "You must provide a file name that contains either $name or $number, which will be changed to the model name or model number (respectively) in the final saved file name". I don't understand what "$name or $number" means...<br>
> May you please help me solving it? I apologize for my ignorance.<br>
><br>
<br>
</div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div><p style="margin:0cm 0cm 0.0001pt"><font face="verdana, sans-serif"><b style="font-size:11pt"><span lang="PT" style="background-color:rgb(255,255,255)"><font color="#274e13">Elza Fonseca</font></span></b><span lang="PT" style="font-size:10pt;color:rgb(227,108,9)"><br></span><span lang="PT" style="font-size:7.5pt;color:rgb(227,108,9)"><br></span></font></p><p style="margin:0cm 0cm 0.0001pt"><font face="verdana, sans-serif" style="font-size:12.7272720336914px"><span lang="PT" style="font-size:7.5pt;color:rgb(227,108,9)">00351 966 199 802</span></font></p><p style="margin:0cm 0cm 0.0001pt"><span style="color:rgb(227,108,9);font-size:7.5pt;font-family:verdana,sans-serif"> </span><br></p><p style="margin:0cm 0cm 0.0001pt"><font face="verdana, sans-serif"><font size="1"><font color="#6aa84f"><span lang="PT">PhD student</span><span lang="PT"><br></span><span lang="PT"><b>CIIMAR – AGE/EDEC</b></span></font><span lang="PT"><font color="#6aa84f"><b> </b></font><font color="#e36c09"><u></u><u></u></font></span></font></font></p><p style="margin:0cm 0cm 0.0001pt"><font face="verdana, sans-serif" size="1"><span lang="PT"><br></span><a href="http://www.ciimar.up.pt/researchgroup.php?id=AGE" style="color:rgb(17,85,204)" target="_blank"><span lang="PT">http://www.ciimar.up.pt/researchgroup.php?id=AGE</span></a></font></p></div></div></div></div></div></div></div></div></div></div>
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