<div dir="ltr">It works now after changing the filename and saving it relative to the original and then using matrixcopy command. Still curious, but works at least.<div><br></div><div>Thanks again,</div><div>Preeti</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Mar 23, 2016 at 1:34 PM, Preeti Gipson <span dir="ltr"><<a href="mailto:gipsonpreeti@gmail.com" target="_blank">gipsonpreeti@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Elaine,<div><br></div><div>Thanks for your reply. I have already tried all these options before sending it on and none of them worked.</div><div><br></div><div>It's a deleterious effect considering when one has finally done the work of fitting and saved a session with multiple files.</div><div><br></div><div>Chimera version 1.10.2 (build 40686). (BTW if its useful info, I am an advanced chimera user).</div><div><br></div><div>Thanks,</div><div>Preeti</div></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Mar 23, 2016 at 1:12 PM, Elaine Meng <span dir="ltr"><<a href="mailto:meng@cgl.ucsf.edu" target="_blank">meng@cgl.ucsf.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hi Preeti,<div>It might not be a bug if the models were somehow moved separately. Similar to my previous response on chimera-users to a slightly different question, it may be possible to bring them back into register by by (A) copying the transformation of the original map to the filtered map, e.g. command:<br><br>matrixcopy #N #M<br><br>… where N is the model number of the original map and M is the model number of the filtered map (see model numbers by showing the Model Panel from the Favorites menu).<br><br>or (B) by resetting all model positions, e.g. command:<br><br>reset<br><br>If neither of those work, it would be helpful if you would report (to the chimera-bugs email address) which version of Chimera you are using (e.g. from the “version” command) and what series of steps can be used to reproduce the problem.</div><div>Thanks,</div><div>Elaine<br><div>
<span style="border-collapse:separate;border-spacing:0px"><div>-----</div><div>Elaine C. Meng, Ph.D. </div><div>UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab</div><div>Department of Pharmaceutical Chemistry</div><div>University of California, San Francisco</div><div><br></div></span></div><div><div><div style="word-wrap:break-word"><div><div><br><blockquote type="cite"><div>Begin forwarded message:</div><br><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><span style="font-family:-webkit-system-font,'Helvetica Neue',Helvetica,sans-serif"><b>From: </b></span><span style="font-family:-webkit-system-font,Helvetica Neue,Helvetica,sans-serif">Preeti Gipson <<a href="mailto:gipsonpreeti@gmail.com" target="_blank">gipsonpreeti@gmail.com</a>><br></span></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><span style="font-family:-webkit-system-font,'Helvetica Neue',Helvetica,sans-serif"><b>Subject: </b></span><span style="font-family:-webkit-system-font,Helvetica Neue,Helvetica,sans-serif"><b>Center of model/volume shifts</b><br></span></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><span style="font-family:-webkit-system-font,'Helvetica Neue',Helvetica,sans-serif"><b>Date: </b></span><span style="font-family:-webkit-system-font,Helvetica Neue,Helvetica,sans-serif">March 22, 2016 at 5:39:36 PM PDT<br></span></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><span style="font-family:-webkit-system-font,'Helvetica Neue',Helvetica,sans-serif"><b>To: </b></span><span style="font-family:-webkit-system-font,Helvetica Neue,Helvetica,sans-serif"><a href="mailto:chimera-bugs@cgl.ucsf.edu" target="_blank">chimera-bugs@cgl.ucsf.edu</a><br></span></div><br><div><div dir="ltr">Hi,<div>I notice an error in recalling the position/center of the volume map (please see image).</div><div><br></div><div>If I apply a low pass filter/mask etc and open the volume it does not overlay the current map. I never came across this issue with the same operations. I have tried restarting session, chimera & even updating.</div><div><br></div><div>It will be great to have your suggestions to fix this issue, as you can imagine. It basically means redoing an entire session, especially if pdb structures have been fit in the model.</div><div><br></div><div>Thanks, look forward to possible solutions.</div><div><br></div><div>Thanks,</div><div>Preeti<span><font color="#888888"><br>-- <br><div><div dir="ltr"><div style="margin:0.1pt 0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">-------------------------------------------------------</span></div><div style="margin:0.1pt 0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Preeti Gipson</span></div><div style="margin:0.1pt 0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Postdoctoral Associate</span></div><div style="margin:0.1pt 0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Howard Hughes Medical Institute</span></div><div style="margin:0.1pt 0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Dept. of Molecular and Cellular Physiology</span></div><div style="margin:0.1pt 0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Stanford University, CA</span></div><div>
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<p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">-------------------------------------------------------</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Preeti Gipson</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Postdoctoral Associate</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Howard Hughes Medical Institute</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Dept. of Molecular and Cellular Physiology</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Stanford University, CA</span></p><p>
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<p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">-------------------------------------------------------</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Preeti Gipson</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Postdoctoral Associate</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Howard Hughes Medical Institute</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Dept. of Molecular and Cellular Physiology</span></p><p style="margin-top:.1pt;margin-right:0in;margin-bottom:.1pt;margin-left:0in"><span style="font-size:8.5pt;font-family:Arial;color:#222222">Stanford University, CA</span></p><p>
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